Pmac087011.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- ECU03_0790_1
- Assembly
- GCA_949715645.1
- Location
- OX454528.1:30786148-30790528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0022 0.92 12.6 0.3 1 23 100 123 100 123 0.95 2 20 0.00034 0.14 15.1 1.2 1 23 129 151 129 151 0.98 3 20 5.2e-05 0.022 17.7 1.0 2 23 160 181 160 181 0.97 4 20 0.00064 0.27 14.3 0.8 1 23 187 210 187 210 0.97 5 20 0.00045 0.19 14.8 1.2 1 19 242 260 242 262 0.97 6 20 1.1e-06 0.00046 23.0 0.8 1 23 270 292 270 292 0.98 7 20 2.2e-06 0.00093 22.0 1.1 1 23 298 321 298 321 0.98 8 20 0.0067 2.8 11.1 1.0 1 23 331 354 331 354 0.94 9 20 8.9e-06 0.0037 20.1 0.9 5 23 449 467 446 467 0.94 10 20 2.8e-06 0.0012 21.7 0.2 1 23 473 495 473 495 0.98 11 20 0.00011 0.046 16.7 0.5 1 23 506 530 506 530 0.98 12 20 0.002 0.82 12.7 0.6 1 20 536 555 536 557 0.93 13 20 1.5 6.4e+02 3.6 5.5 1 23 595 617 595 617 0.97 14 20 2.9e-05 0.012 18.5 2.8 1 23 623 645 623 645 0.98 15 20 0.00033 0.14 15.2 1.7 1 23 651 673 651 673 0.97 16 20 0.00028 0.12 15.4 2.5 1 23 679 701 679 701 0.97 17 20 6.2e-06 0.0026 20.6 5.9 1 23 797 819 797 819 0.98 18 20 0.00033 0.14 15.2 0.8 1 23 825 847 825 847 0.97 19 20 1.8e-05 0.0074 19.2 0.6 1 23 854 876 854 876 0.98 20 20 1.2e-05 0.005 19.7 5.5 1 23 882 904 882 905 0.96
Sequence Information
- Coding Sequence
- ATGCAAAACAACACCGACCTATTCACTCCACTACCTGTAGATATGTCCACTCCAAATGCCCTGCTCTATCAACTTAACGATAGAGacgaaaaattcataaaatccgAGTTCTACGCCTTCGAAATAGATAGCTTCACTGTGCCCGAAATAGACGCGATAGCCAGCCTTAGCCCGATTGCAGAAGATTCAGGTAGCTCATTGCAAGACCCTAAACTCGAACCATTGTTTTCTTTAGTGGAACCAGCGCCGTCGTGTGACAAATTTCATATCCCTCAGCTCGTGGAAGCAGTGAAGCAGTTCTCCTGTGATTTGTGCGAGGAGACCTTTTCATCGGCACAGGTATTACGTTTGCATAGAAGTGTTCAACACATTTCTACTAAGGAATTTCGCTGCCGAAAGTGTCCGTCGTCTTTCAACTTCAAGTCAAATCTAGTTTTACATTTGGCGTCGCATGTTTCCAGTTGTAGCACAAAAGCTGAGTGTCCCGAGTGTAAGATGTCCTTCAAGCGCATTTCCAGTTTCAAGGGTCATCTAAGGTCACATCAAACAAGCGATCGCTTTAAATGCAATCGCTGCGAGAAGGAATTCGAACTAAAGGGCTACTACGAGAAACATTTGGCAACCGCACACAAGCCAGGCTCCGACGGGACTGTGGAGGAGATTTTGGCAAAAGTAGCTATAAACGCGAGAAGACGGGTAAAATCGAGGAAACTTCAAGGTAAATACTCTTGCTCAACGTGTGGAAAGAACTTCCCAAAGCCTTGTCTGCTGAAGCGGCATGAGGTATGCCATTCGGGTGAAAAGCCATTTAAATGCACAGTATGCGACCAGGGATTCACGCAAAAAACATCACTTGCGAGGCACATGTTACTGCACAGCGGTGTCAAAGACTTTAAGTGTCCTAAGTGCAGCATGAGTTTCGCCCAGAAGAACAATCTTCTCGTGCACATTAAGCGCACGCATCCCATTCACATGAACTTGGACGAGATGTTCCCGTGCGAGTATTGCCCGTGTGTGTTCACCAAACTGAACAGCGTCAGTCGCCATAAGGCAATAATGCATCCGGATAGGGGGACTGCTGCAGATAACGATGCTTTCAACGATGACGATGAAGATAATGTGAATGTGGCCAAGGTATTGGAGCAGCTGAAGAGCTTGCAGGAATCCATGAATATTTTGGACATGCAGCCACCAGCGTTGGAGTTGTCGCTGCTGAAACCACCATCGCCCGGACCAAAGGTCCGTATGCTGACGCTGGTCGATACCTCAAACCCGAGGAAGGAGAAGACCTACAAAATGGTAAAGGAAATTCTGTACAAAGGACAACGAACTATTGCTTGCATTTACTGTGACAAAGCGTTCAAGCGGCAATTTGATCTGTTAAGACATCTTCGTACTCACACGAAGGAGAAGCCATTCCAGTGCGAATTGTGTGATAAAAACTTTGCCACGAGTGCAGCTCTTAAAGTTCATCAAAGTATCCATATTTCTTCAGAAGAGAATCAAACAAAAGTTTATACCTGCACAGCGGATGAATGTGGCAAGCGGTTCTCTTCCATGCGCAAACTCGACATTCACACAAGAATACACTCTAGTTCCATATCGTACATTTGTCCTTTATGTTCGAAAATCTTCACGTCGAAAGCCGGCTTCTCTGCGCACAAGCACAAGCCGCAAGATAATGAGTTCAACGTGATTCGCCCACTTCTGAAGTTGCCAGTTAATATTGAGCGAAATTTCACTGAAGAGACAGAAAAAGCCGAGGAGTACAGCAAGAGAAATCACCAGTGTTGTGTCTGTGGATTGAAAATGCAAAAGTTGTCACACCTACGACAGCATGAGGCCACACACAAAGGAGAGAGCACTTTCAAGTGTTCTATATGCTTTAGATCATATACAACTCAAAGTTCTCTCAATTTACACTTCAAAATCCATACAGCTGAGAAGACGCATGTATGTGAAAACTGTGATGCAAAATTTTTAACGCGGTCTCTTCTTAAGCGACACATGCTCTCACACAGTGACAAGCGAAATTTCGCCTGCCCATATTGCAACGAACTTTTCAAAACCAGTGACAACTGTAAAAAGCACATTTTGACACATGCTCGCAGTCTGTTAGCTACTTCCGATTCACAACCGCCAGAGGAGGAACACACACAACCGCCAACTGAAGAAAGTTCTCCTCCTGAAACCATGTCTCAACCGTTCATCGCAGTTGTCCAAAGCCCACAGAAAAATCTCTCGCCGAAGTTCATTGCACTAGAAATGGTAAAGAACTGTAAGAATCACACTCACAAAAATTTAACCATCGAAACTGTGGCCAGTTCCCCTAAGAAATCATCAAAAAAATCTTTGGCACGATCCTTGAAACAAATAAGTCAAACTGGTCATACATGCAATCATTGTGTGAAGACGTTTTACAAAGCAAGCGATTTACAACGTCATTTACGGACGCATACGAAAGAAAAACCGTTCGACTGCAGTTTGTGTTCGAAACAATTTGCTTTGATGTCCACTTTGGTTCAACACATGAAGACTCATGACACGCTGCGGGAGACCTTTTCTTGTCAAGTGTGTGGCAAGAAGTACACCTCAAAGAAGGTGCTAGTAGTGCACCTAAGAATACATACGGGCGAGCGACCCTTTCAGTGCGATGTGTGCAAGAAGACTTTTCGAACTTCCGGTCATAGGATATGGCATATGAAGACGCATCATAAGAAGAAGAAATCAGGCTCTGCTATGTGTTAA
- Protein Sequence
- MQNNTDLFTPLPVDMSTPNALLYQLNDRDEKFIKSEFYAFEIDSFTVPEIDAIASLSPIAEDSGSSLQDPKLEPLFSLVEPAPSCDKFHIPQLVEAVKQFSCDLCEETFSSAQVLRLHRSVQHISTKEFRCRKCPSSFNFKSNLVLHLASHVSSCSTKAECPECKMSFKRISSFKGHLRSHQTSDRFKCNRCEKEFELKGYYEKHLATAHKPGSDGTVEEILAKVAINARRRVKSRKLQGKYSCSTCGKNFPKPCLLKRHEVCHSGEKPFKCTVCDQGFTQKTSLARHMLLHSGVKDFKCPKCSMSFAQKNNLLVHIKRTHPIHMNLDEMFPCEYCPCVFTKLNSVSRHKAIMHPDRGTAADNDAFNDDDEDNVNVAKVLEQLKSLQESMNILDMQPPALELSLLKPPSPGPKVRMLTLVDTSNPRKEKTYKMVKEILYKGQRTIACIYCDKAFKRQFDLLRHLRTHTKEKPFQCELCDKNFATSAALKVHQSIHISSEENQTKVYTCTADECGKRFSSMRKLDIHTRIHSSSISYICPLCSKIFTSKAGFSAHKHKPQDNEFNVIRPLLKLPVNIERNFTEETEKAEEYSKRNHQCCVCGLKMQKLSHLRQHEATHKGESTFKCSICFRSYTTQSSLNLHFKIHTAEKTHVCENCDAKFLTRSLLKRHMLSHSDKRNFACPYCNELFKTSDNCKKHILTHARSLLATSDSQPPEEEHTQPPTEESSPPETMSQPFIAVVQSPQKNLSPKFIALEMVKNCKNHTHKNLTIETVASSPKKSSKKSLARSLKQISQTGHTCNHCVKTFYKASDLQRHLRTHTKEKPFDCSLCSKQFALMSTLVQHMKTHDTLRETFSCQVCGKKYTSKKVLVVHLRIHTGERPFQCDVCKKTFRTSGHRIWHMKTHHKKKKSGSAMC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -