Pmac060321.2
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:278289573-278290444[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-06 0.002 20.3 0.0 1 33 15 47 15 51 0.95 2 2 4.9 1.1e+03 1.9 0.0 17 27 138 149 133 153 0.76
Sequence Information
- Coding Sequence
- ATGGCTACTAAGACCCAAAACGCTGCAAGGCGCAAGCAATGGAAACCAGAGGACATGGAACAAGCCATTCATTGCTTtcatgcaaaacaaatgggttaccTCAAAGCTTCGAAAGCATTCAATGTTCCACGCGGAACTCTTTTTAGATTGGCCACATCTGCAGAATGTTCTACTAAAGTATCGCGTATTCCCCTTGGAAGAAAACCTATCTTGACAAACGAGATGGAGGCTGAACTTTTAAAATATATCAAAGAGATGGAGTCGCGATTCCTTGGGTTAACGCAATCAAATGTTAGGTCGTTGGCTTTTCAATTGGCATTAAGGAAAAACATTCCAAACAAAATTTCGATTATAAAGCAATGCGCTGGGCGTGATTGGCTTAAAGGGTTTATAAAACGACATAAAAATGATCTGTCAATTAGAAAAGCGTCTGATCGGATCTATAATGTTGACGATACAGGTTTTTCGATTGTTCAAAGCAAACAGCCAAAAATATTAGCTACCAACGGAAAACGACAGATTGGCATTTTGACCTCCGCTGAAAGGGGCTCGCTTGTAACCTTGGTATTAGCTATGAGCGCTGGTGGTCAGTTAATGCCACCACTTTCTGTCTTCCctagaaaaaatgaaaatgtgcaGTCAATGAAAAATGCTCCGCTGGCTCAATCGCTGCATTTCATCCGTCGGGATGGATACAACTTAACCTCTTTACCAAATGGTTTAAgcatttcattaaaaaagtgCAACCGGTTGAGGACTCGCCAGTTTTACTAA
- Protein Sequence
- MATKTQNAARRKQWKPEDMEQAIHCFHAKQMGYLKASKAFNVPRGTLFRLATSAECSTKVSRIPLGRKPILTNEMEAELLKYIKEMESRFLGLTQSNVRSLAFQLALRKNIPNKISIIKQCAGRDWLKGFIKRHKNDLSIRKASDRIYNVDDTGFSIVQSKQPKILATNGKRQIGILTSAERGSLVTLVLAMSAGGQLMPPLSVFPRKNENVQSMKNAPLAQSLHFIRRDGYNLTSLPNGLSISLKKCNRLRTRQFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -