Pmac063689.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454527.1:23147115-23147611[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-05 0.0031 19.7 0.0 2 24 13 35 12 38 0.92 2 2 1.7 4e+02 3.3 0.0 15 28 122 135 121 137 0.91
Sequence Information
- Coding Sequence
- atgtcGGTGGAACGTTTTTCCTTTGCGAAAACTCCACCCAATGCAATGAAAAAAGCGGTGGATATGGTGGTAAATGAGGGAATTTCATTGCGAAAAGCGGCTAAAAATAATGGGTTGTACCCGAACTATGCAGTGAATGCCGTGTTTAGTAAGGAAGAAGAACTATCATTAACATCCTGTATAAAAAACTGCTCCATTATGTTCTATGGATTGACGTTACTAAATCTAGGGCGGTTGGCTTACCAGACCGCAGTTGCTAATTCCAGAAACACAAGGAACAGATTCACTGAGCCTGAGGTTGAGGATATTGCATCGGTAGCACACGAAGATATAGAGCTGCTGCTGCCAACGCCGACTCCATGTGGTCACACTAGTCGCCAAAAGGCATCGGTTGTGTTTGATGTTGACTTTCAGGCCTATGGAAGCAGCCTAaagtga
- Protein Sequence
- MSVERFSFAKTPPNAMKKAVDMVVNEGISLRKAAKNNGLYPNYAVNAVFSKEEELSLTSCIKNCSIMFYGLTLLNLGRLAYQTAVANSRNTRNRFTEPEVEDIASVAHEDIELLLPTPTPCGHTSRQKASVVFDVDFQAYGSSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -