Pmac029479.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454525.1:344713593-344714184[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 3.8e-05 25.8 0.0 2 33 17 48 16 59 0.89
Sequence Information
- Coding Sequence
- atgcaaaattcaaaagaaggggCTAAACGCGATTTCCATAAGTACCCGGAAGAAGCGCTTACAGAAGCATTAAAGAAGATTCGGGAGGAAAACTGGTCAATTAGGAAAGCCAGTAAAGAATTCGGAGTACTAAGGACAACAAAACAAGACCGTATTCATGGCAGGGCTGCCGAAAAACCGAGGCAAATGGGGCCCGATACTGTGCTGAGTACGGGCGAAGAAATAAGTCTTGTAGATGCTAGTAAGGGTTGGTATTACGGCTTTCTCATGCGCCATTCCGAACTGTCCTTCAGAACACCAGAGGGTCTATCAAAAGGCCAGGCAATCGTTACCGAGGAGTCAGTAAGGAAGTGGTTTGAGGATTTAAGGAATTATCTTCATGAAATAGATGCTCTAGATATTCTGGAAGACCCTTCCAGAATTTTCAATGGGGATGAAACATCGTTTTGCCTATCTCCGAAAATTGGTATTGTCTTAGCGCCAAAGGGTTGGAAAAACCCTTACAAAGTAAGCTACGATAACGAAAAGGAAGCATAG
- Protein Sequence
- MQNSKEGAKRDFHKYPEEALTEALKKIREENWSIRKASKEFGVLRTTKQDRIHGRAAEKPRQMGPDTVLSTGEEISLVDASKGWYYGFLMRHSELSFRTPEGLSKGQAIVTEESVRKWFEDLRNYLHEIDALDILEDPSRIFNGDETSFCLSPKIGIVLAPKGWKNPYKVSYDNEKEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253520; iTF_01253550; iTF_01253498; iTF_01253700; iTF_01253507;
- 90% Identity
- iTF_01253520;
- 80% Identity
- -