Pmac040164.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- clz9_4
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:100743397-100744431[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.9e-08 2.3e-05 26.5 0.0 4 41 19 57 18 59 0.92
Sequence Information
- Coding Sequence
- ATGTCCAAGCAAAGACAAACTCCTCATAGGCGTTACAATAGTACACCTAGTAAGAAAATGGAGGAAGCATTGCAAATAGTTGAAAGAAAAGAAATGTCTATTACAAAGTGCGCTCAGCATTTCGGTATTGCGAAGGGAACCCTTATCAATAAGATGCATCAAAGGCATGGTAAGGTGTTTGGAAGGCCTTGCATTTTTACAGATGCTGAGGAAAAGCTCTTAGTTCAAGCTATACTAACCACAAGCGAATGGGGCTTTCCTTTAAGTGGGATAGAAGTTCAAAAACTCGCGACCAATTATCTGAATAAAcgtgacaaaacaaaaaaacaaaagttgttGAGAAAAGATTGGCTAGAAGGGTTcttcaaaacaaataatacaCTTCTTAGCAAGCGAATGTGTCAAAACCTTAAAACTTCCAAGGCAAAGTTAACAAGAACGTTTATAGGAgggtattttaataatttaaaaaagactATCACTTTTGATAATGGGGAGTATATTTCAGCtagttatatatttaattaCGATGAAACTAATTTATCAGATGATCCCGGTTCCCAgaagtgttttttaaaaaagggtTGCAAATACCCAGACAGAGTAATGGACAGTTCGAAGACCAGTATATCGGTTATGATCAGTGGCTCGGCAGCTGGAGAGCTTTTACCCCCTTATGTTGTCTATAAATCGGAACAATTATGGGAACAATGGATGGAGGGCGGGCCAAAAAACACGAAATATAATAGAAGCAAGTCGGGTTGGTTTGACgctacaatttttaaatattggttCATTAATCACTTCATACCATGTACGAGAAATTTGGATGGGGAAATCGTTCTATTGGGAGATAATCTTTCCAGCCAATTTTATGTAGATGTAGTTGAAGCTGCGGTAGAAAACAAAATTAGGTTTGCTTGTTTTCCTCCAAATTCAACACACCTTCTACAACCGTTAGACGTAGCATTCTTCAGTCCTCTAAAAAAGACATGGAGGAGTAAGCAAATCAAGAACTTCGCAAGTGCTAACTAA
- Protein Sequence
- MSKQRQTPHRRYNSTPSKKMEEALQIVERKEMSITKCAQHFGIAKGTLINKMHQRHGKVFGRPCIFTDAEEKLLVQAILTTSEWGFPLSGIEVQKLATNYLNKRDKTKKQKLLRKDWLEGFFKTNNTLLSKRMCQNLKTSKAKLTRTFIGGYFNNLKKTITFDNGEYISASYIFNYDETNLSDDPGSQKCFLKKGCKYPDRVMDSSKTSISVMISGSAAGELLPPYVVYKSEQLWEQWMEGGPKNTKYNRSKSGWFDATIFKYWFINHFIPCTRNLDGEIVLLGDNLSSQFYVDVVEAAVENKIRFACFPPNSTHLLQPLDVAFFSPLKKTWRSKQIKNFASAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522556;
- 90% Identity
- -
- 80% Identity
- -