Pmac067681.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454527.1:79221489-79221845[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-08 1.7e-05 26.9 0.0 3 36 18 51 16 56 0.93
Sequence Information
- Coding Sequence
- atGACTTCGAGAGCTACACAGCCGCCAAAAAAACGGCAGGCGTGGAACAAAGACGACATGAAAGCAGCATTAGTTGCCATTAAAGAGAAGAGGATGGGGTTCCTGAAGGCATCGAAACAATTTAAGGTGCCTAAAACTACCTTGAGGCGTTTGGTTGCGCAAACACAAAAACCAGTGGATGATTTGGTGGCTACTAAGTTGGGCAGAAAACCCATCTTCCCTCTAGAGCTCGAGGACTCTTTAGTGGAATATGCGCTGTTGATGGAAGCAAAGTTGTTCGGTCTAACAAGAAAAGACATACGATTATTAGCATTTCAACTAGCTATTAAAAACAATATACcgaaccattgtatataa
- Protein Sequence
- MTSRATQPPKKRQAWNKDDMKAALVAIKEKRMGFLKASKQFKVPKTTLRRLVAQTQKPVDDLVATKLGRKPIFPLELEDSLVEYALLMEAKLFGLTRKDIRLLAFQLAIKNNIPNHCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253743;
- 90% Identity
- iTF_01300802; iTF_01253743; iTF_01253725;
- 80% Identity
- -