Pmac033625.1
Basic Information
- Insect
- Portevinia maculata
- Gene Symbol
- -
- Assembly
- GCA_949715645.1
- Location
- OX454526.1:2315927-2316427[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-08 2.1e-05 26.7 0.0 1 34 15 48 15 56 0.95 2 2 9.9 2.3e+03 0.9 0.0 17 23 138 144 133 152 0.75
Sequence Information
- Coding Sequence
- ATGGTTACTAAGACCCAAAACGCTGCAAGGCGCAAGCAATGGAAACCAGAGGACATGGAACAAGCCATTCATTGCGTtcatgcaaaacaaatgggttaccTCAAAGCTTCGAAAGCATTCAATGTTCCCCGCGGAACTCTTTTTAGATTGGCCACATCTGCAGAAACTTCTACTAAAGTATCGCGTATTCCCCTTGGAAGAAAACCTATCTTCACAAACGAGATGGAGGCTGAACATGTAAAATATATCAAAGAGATGGAGTCGCGATTCTTTGGGTTAACGCAATCAAATGTTAGGTCGTTGGCTTTTCAATTGGCATTAAGGAAAAACATTCCAAACAAAATTTCGATTATAAAGCAATGCGCTGGGCGTGATTGGCTTAAAGGGTTTATAAAACGACATAAAAATGATCTGTCAATTAGAAAAGCGTCTGGTACGTCAATCGCTAGAGCCACTGGGTTTACAAGAAGCAAtgttgatcttttttttttaccttcTTAA
- Protein Sequence
- MVTKTQNAARRKQWKPEDMEQAIHCVHAKQMGYLKASKAFNVPRGTLFRLATSAETSTKVSRIPLGRKPIFTNEMEAEHVKYIKEMESRFFGLTQSNVRSLAFQLALRKNIPNKISIIKQCAGRDWLKGFIKRHKNDLSIRKASGTSIARATGFTRSNVDLFFLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253828;
- 90% Identity
- iTF_01253651;
- 80% Identity
- -