Basic Information

Gene Symbol
-
Assembly
GCA_949715645.1
Location
OX454526.1:27770334-27771981[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-09 3.9e-07 32.2 0.1 3 39 14 49 13 53 0.93

Sequence Information

Coding Sequence
ATGTCGGCCGAACGCTTTTCTTTTGGAAAAACTCCATCTACTGCCATGAAAAAGGCGGTGGAAATGGTCAATGAAGGAATATCGTTGCGGAAAGCGGCAGACAAAAATGGAGTTGCTTACCAAACGCTCGCGCGCTATGTTAAACGCTTCAAGGAGTcaccttccataagaatgaGCCCAAATTATTCTGTTAATGCAGTCTTCAGTGCCGAAGAAGAGCAGTCACTAACGGAATATATAAAGAACTGTTGGAAAATGTTTTATGGTTTGTCGTTGGAAGACGTAAGACGTTTGGCATACGAAACAGCTACAATCAATTCAAAGAAGCTTACGAAATATTGGGTAGAGCATAAAAAAGCAAGTCACGACTGGATGAAGTGCTCCCGGAAAAGAAATCCATCTTTATCACTCCGGGCTCCTGAAGCCTGTAGTTTATCTCGGGTAACTTCTTTCAACAGGCACAGTGTTAACATTTTTTATGACAATTTATGCGAAGTTCTCGCACGAtcatcaaactgcttttcagCTGGAACCCGGATCTACAATCTGGATGAAACACGGCTAACTACAGTCCAGGTTTCTGCAAAAATTCTTGTGGCGAAGGGAGTGAAGCAAGTCAATAAGGTTAGAAGCGCAGAAAGAGGTACGCTAGTTACTCTCTGTTGTATCATAAGCGCAACCGGGCAATACATTCCGCCAATAATGATTTTCCCGAGAGTACATTTCAAAGACCATATGCTGGTTGGTGAACCACCGGGAACACTTGGTTTGGCGAATCCTTCAGGTTGGATGAGCTCAATGTGTTTCGTTAAAGTGATGgaacattttgtaaaattcacTGTGAGTTCCAAAGAAAATCCAACTCTGTTGTTGATGGATAACCATAAAAGCCACATAAATGTTACTGCTCTCAACTACGGAAAAGAATACGAAGTAATGATGCTGACCTTTCCACCGCATTCATCTAATAAAATGCAGCCACTATACATTTCTGTCTACAAGCCTTTTAAGACAGCGTATAACCATGCGATAGACAACTTTATGATGCAGAATTCCGGTAAAACCTTTTCTATATACAACATAGCTTCAGCAACTGGGTATGCTTTTGAAAAGTCGATGAGACCATCAAATATAGTATCAGGCTTCCGTAAGCCCGGAATATATCCGCCAGATAGAAATGCATTGACCGATGTGGACTTTTTGAGCAGCATTGTAACCGACAGGCCTTTAAGAAGCCAAACTGAGGAGACCAACCCAAACGATCAAGTTGTTGACCAATTCGTTGCCCCTCTCAATGAATTTGTTAGCCCGGAACAATTCAAAGGCTATCCCAAAGCACCGCCAAGACTGAACACCCGGAAGCAAAGAAAAAAAGGGAAGAAGCCTTATCCTGACAGACACTCCGGAAAAGGAAGAGCTGGAAAAAAAAGAGCTTATGAaaaagccaacaaaaaaaatagcaaaacaaACGTTTGTAACACGAAAAGTTTTACAGTCTGA
Protein Sequence
MSAERFSFGKTPSTAMKKAVEMVNEGISLRKAADKNGVAYQTLARYVKRFKESPSIRMSPNYSVNAVFSAEEEQSLTEYIKNCWKMFYGLSLEDVRRLAYETATINSKKLTKYWVEHKKASHDWMKCSRKRNPSLSLRAPEACSLSRVTSFNRHSVNIFYDNLCEVLARSSNCFSAGTRIYNLDETRLTTVQVSAKILVAKGVKQVNKVRSAERGTLVTLCCIISATGQYIPPIMIFPRVHFKDHMLVGEPPGTLGLANPSGWMSSMCFVKVMEHFVKFTVSSKENPTLLLMDNHKSHINVTALNYGKEYEVMMLTFPPHSSNKMQPLYISVYKPFKTAYNHAIDNFMMQNSGKTFSIYNIASATGYAFEKSMRPSNIVSGFRKPGIYPPDRNALTDVDFLSSIVTDRPLRSQTEETNPNDQVVDQFVAPLNEFVSPEQFKGYPKAPPRLNTRKQRKKGKKPYPDRHSGKGRAGKKRAYEKANKKNSKTNVCNTKSFTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01253675; iTF_00314221;
90% Identity
iTF_01253675;
80% Identity
-