Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 8.9e-13 2.1e-10 42.7 0.0 4 42 131 170 128 172 0.88

2 2 0.00018 0.042 16.1 0.0 13 39 250 276 239 281 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	8.9e-13	2.1e-10	42.7	0.0	4	42	131	170	128	172	0.88
2	2	0.00018	0.042	16.1	0.0	13	39	250	276	239	281	0.83

Coding Sequence: ATGGTTATCCTCTATAACGCAGACAAAATAAAAAGTATCGACGTATCCGATACAGATTCCAATCGTGTGCTAGAACCGCTGCTGCCCATACTACCAGTTATCCCAGTAGATGACTCTGCTTCAACAAATGATCAGTACATCATATTCCAGCTGAAAACCGATAAAACCCCGATGTTCAACTATGTCATAACtcaagtgaagaaaccaccactggaAGATGGCAATCCTAGTAAAACGATGATCAATCTGCCACCTTTTGATGCTCAAAACGATCATGGAAAACAGCTTACAACAGCACCATATGTGATAAGTGTTCAAATACCAGCCGAACCTGGCGAGGAAGAGGTAAAGGACAATTCGGTCAAATCTCGACGTGCTGCCAGGCAAAAGAAACTAACAGAAGCAGTAGATGCTGTTGTCAGTAAGGAGTTGTCCATAAGCAAAGCTGCTAATGTCTTTCAAGTTGCAAAGAGCACCCTCTGGAAGGAGGTAAACAAACACACCAATCATCGGCGAAAGAAAGTCGATCTAGAACTGAATCAAGCTATTACCGATCGTATTTGTGCTGGTGAGTCTCTGTCAGTCATTTCGAGGTCTCTTAAAGTAGCTAAATCTACTTTGCATCAGCACAAAGTTCGGCTGGCACAAAGAGGTCAATTGCCATCAAATGTTAGTTACAAACCACCCAGACATCCGTCTGAGAGAGTTGCTATGCAGGAGCGCATCATTCAAGCGTTTCGTGGCTGCCACGTTAATGGTATGTCATTGCGTCTTGCAGCAAAGTTTCACAAAATATCACCGTCCACATTGTCCAAGTATATGCGACGTTTTAAAGCCTCACAACTTGAAGCAGACGATGTTACTGATCAAGTTGTTATTAATGAGGCAGAAGGCGATAGCGAGGAAGAACTTTTGAAAGAGGAAACAGCTAGTAAAGAGCAGGAGGACCTAAATGACTTCGATGTGGATGCCTACTGTAAGAAACGAGAAGAGACAAACAGTGAAGACAGTGACTTTTTGACCAGTTTTGACTTTGAAACCTTTGAGGAGTACGTTAAGAGAGAGCTCGAGTGA
Protein Sequence: MVILYNADKIKSIDVSDTDSNRVLEPLLPILPVIPVDDSASTNDQYIIFQLKTDKTPMFNYVITQVKKPPLEDGNPSKTMINLPPFDAQNDHGKQLTTAPYVISVQIPAEPGEEEVKDNSVKSRRAARQKKLTEAVDAVVSKELSISKAANVFQVAKSTLWKEVNKHTNHRRKKVDLELNQAITDRICAGESLSVISRSLKVAKSTLHQHKVRLAQRGQLPSNVSYKPPRHPSERVAMQERIIQAFRGCHVNGMSLRLAAKFHKISPSTLSKYMRRFKASQLEADDVTDQVVINEAEGDSEEELLKEETASKEQEDLNDFDVDAYCKKREETNSEDSDFLTSFDFETFEEYVKRELE

Sequence clustering based on sequence similarity using MMseqs2