Pjap016546.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- nfxl1
- Assembly
- GCA_004785975.1
- Location
- SMLS01062268.1:1756-9281[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 3.1e+04 -7.8 5.6 15 19 165 169 164 169 0.81 2 17 0.46 7.1e+03 -2.1 0.9 4 10 200 206 200 206 0.91 3 17 2.5e-07 0.0039 17.9 17.2 1 19 214 231 214 231 0.99 4 17 1e-07 0.0016 19.2 16.2 1 19 267 285 267 285 0.95 5 17 1.9e-08 0.0003 21.5 15.8 1 18 320 337 320 338 0.97 6 17 1.1 1.7e+04 -3.3 0.7 5 10 362 367 362 367 0.91 7 17 2.2e-05 0.34 11.7 10.5 1 18 373 390 373 391 0.98 8 17 0.37 5.7e+03 -1.8 0.3 1 5 400 404 400 404 0.95 9 17 5.5e-05 0.87 10.5 17.1 1 18 425 442 425 443 0.94 10 17 1.6e-10 2.5e-06 28.1 12.7 1 19 452 470 452 470 0.98 11 17 0.0003 4.7 8.1 6.5 10 19 519 528 517 528 0.92 12 17 0.31 4.9e+03 -1.5 10.5 3 12 539 548 531 548 0.81 13 17 2 3.1e+04 -4.7 2.9 14 18 576 580 576 581 0.86 14 17 4.4e-06 0.068 14.0 4.6 1 11 617 627 617 632 0.89 15 17 0.00016 2.5 9.0 16.6 3 19 658 674 657 674 0.94 16 17 4.9e-06 0.076 13.8 9.2 1 15 717 730 717 732 0.97 17 17 1.1 1.7e+04 -3.2 0.4 5 10 766 771 766 771 0.88
Sequence Information
- Coding Sequence
- ATGAGTGACTTTAGGAAAAGGCAAAGTAAGCCAAGAAACCCCTGGACCATAACACAGCCACGAGATCAAAAACCGGAAAACATACAAAATGCATTTGCTAGAAATTCAGAGAGATTTACTGAAGCCTCAAAGAAACATCAAGCAGCTGCACAGAAATATGTTTTGGATTACGACACATCTTCTGAAGAAGATGAATTGGAATCTGGAAATATCATCAaaatcaTTTTAAAGGATTATACATCTACAGGAGCAGAAGTAGGTAACTTAACTAGAACAAGAGGCTATCTTGAAGATGCTTTTGTATCAGGAGCTGCTACTtgtttaatatgtatatctcaTATTAAACGTAGTGATGCAaTTTGGAACTGTAACGAATGCTATTGCAGTTTTCATTTAATGTGCATACAAAGATGGTCAAAAgatactatttttaatttgaaacaattgtCTGAAGAACATGCACATGTGAGAAACATAAGTATTGCTTGGTGTTGCCCAAAGTGTCGTAAGGAATATGGCCAAAAAGATATTCCCGCTGACTATAGATGCTTTTGCAAGAAAGCTGTTAATCCTGCATATCAATACCTGTTAATACCACATTCATGTGGTAATACTTGTCGTAAAGAATTAAAACCTCGCTGTGGTCACGAATGTGTTTTGCTCTGTCATCCTGGTCCATGTCCCCCTTGTCCAAAAACAGTTAATGTAAGTTGCTACTGTGGATCTAAACCTGCAAAACCTCAGAGATGTTCCAATAAAGATTGGTCTTGTGGATCTCCCTGTAACAAACTACGTACTTGTAATAAGCACAAATGCATTCAACCATGCCACCCTGGTGATTGTGAACCTTGTCCAAAAAAGAGTGTTCAAAAATGTGTATGCGGTTTAAATCAAAAGTTAAGAGATTGTGCTTCTCCTATATGGCAATGTGAAAAGGAATGCGGCAAACCATTAGAATGTGGTCATCATAATTGCTTAAAAATATGTCATTCCGGGGATTGTGGCCCCTGTGAACTTTCAGAACTCAGAACTTGTCCTTGTGGAAAATCAACTTACCAGTTACCATGTACAGAAGATACTCCTACATGTGATGATACTTGTGGAAAACTCTTAGAATGTGGAGAGCATATGTGTTATCAAAAATGCCATAAAGATAAATGTGGTTCATGTGTAGAAATAGTTGTGAAATCATGTCGTTGTGGACTGCATACCAAAGAAATTCAGTGCAAAAAGCTGTATTTATGTGAAACAAAATGTAAGCAAATGAAGGATTGCAATAAGCATCCATGCAATCGAAAGTGTTGTGACGGTAATTGCCCGCCATGTGAAAAGCCTTGCGGAAAAACTCTAAGCTGCGGTAATCATAAATGTACGTCCATATGTCACGCAGGTCCTTGCTATCCATGTCAATTAACTGAAAATGTATATTGCCGTTGTGGGGAAACTTTTCTTACGGTACCTTGTGGAAGGAAACATAAAACCAGGCCaccaaaatgtttaaaacaatgcTTAATACCTCCAGAGTGTCATCACCCAAAACGCGAATATCATAGATGTCATTTCGGAGATTGTCCTCCTTGTCGACAGGTCTGCGGAAAAACACATGAAAAATGTTTACATACGTGCCCAAAAGAATGTCATACTTCGGTTCTTGTCAAAATAGAAGCAAAGAAGGCGACTATGCCTTGGGAACAAGCACCTCCacagttagaaaaaaaatctcttccGTGTCCTGATTGTATGGTACCAGTTCCAGTGACCTGTTTAGGGGAGCACGATACTTCGGACTGGCCTTGTTATATTGCTAAACCAGCCAGTTGCGGTAGACCATGTGGAAGGCTTTTAAAATGCGGTAATCATACTTGTCAGATGGAATGTCATGTTATTGAAGGACCACACGATTCAGTGCGGGCTGGAGATAACTGTGAAATTTGCACAAATCCTTGCACTAATCTCTCAGTGGATGGGTGTATTCATCAATGTCCAAAGCCTTGTCATCCAGATGACTGTCCACCATGCACACAAATTATTCGAATTAAATGCCATTGTGGGCTTAATCAACCATATGTTGCTTGTAAGAATTGGACAAGTGCAGAAAAGAAGGAAGAACTGCAAAGTTGCGGTAATCAATGCCCCAACAACTATGAATGCGGCCATAGATGCCGTTCTAACTGTCATTCAGGTCCATGTGTTAGCAAAGAGGGTTGTAAGAAAAAAGTTAAGGTAGCTTGCACCTGCAAGCGtatcaaaaaagaatttttatgcGAAGTAGCACGTCAAGGACTAGCGGTAATAAATTGTGATGAAATCtgcgaacaaaaaaaaatcgaagaagAAAAATCAAAGCAGATAAAGtttgaagaaaagaaaaaagaagaagaaatcaaaaatcaaaaagaactggaaaaatatgagaaaatatTCCAAGGCAAACGAAAGAATAGAGAACGTAAAATTCTTCAGGAGgaagaaacaaaacattttctgtCAGAGTATAAAATTCCTATGTGTTTTGCTGTTTTAGGAATGATTTCCGCCTTGTTTTACATTTATATCAATTAA
- Protein Sequence
- MSDFRKRQSKPRNPWTITQPRDQKPENIQNAFARNSERFTEASKKHQAAAQKYVLDYDTSSEEDELESGNIIKIILKDYTSTGAEVGNLTRTRGYLEDAFVSGAATCLICISHIKRSDAIWNCNECYCSFHLMCIQRWSKDTIFNLKQLSEEHAHVRNISIAWCCPKCRKEYGQKDIPADYRCFCKKAVNPAYQYLLIPHSCGNTCRKELKPRCGHECVLLCHPGPCPPCPKTVNVSCYCGSKPAKPQRCSNKDWSCGSPCNKLRTCNKHKCIQPCHPGDCEPCPKKSVQKCVCGLNQKLRDCASPIWQCEKECGKPLECGHHNCLKICHSGDCGPCELSELRTCPCGKSTYQLPCTEDTPTCDDTCGKLLECGEHMCYQKCHKDKCGSCVEIVVKSCRCGLHTKEIQCKKLYLCETKCKQMKDCNKHPCNRKCCDGNCPPCEKPCGKTLSCGNHKCTSICHAGPCYPCQLTENVYCRCGETFLTVPCGRKHKTRPPKCLKQCLIPPECHHPKREYHRCHFGDCPPCRQVCGKTHEKCLHTCPKECHTSVLVKIEAKKATMPWEQAPPQLEKKSLPCPDCMVPVPVTCLGEHDTSDWPCYIAKPASCGRPCGRLLKCGNHTCQMECHVIEGPHDSVRAGDNCEICTNPCTNLSVDGCIHQCPKPCHPDDCPPCTQIIRIKCHCGLNQPYVACKNWTSAEKKEELQSCGNQCPNNYECGHRCRSNCHSGPCVSKEGCKKKVKVACTCKRIKKEFLCEVARQGLAVINCDEICEQKKIEEEKSKQIKFEEKKKEEEIKNQKELEKYEKIFQGKRKNRERKILQEEETKHFLSEYKIPMCFAVLGMISALFYIYIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434531;
- 90% Identity
- -
- 80% Identity
- -