Pjap006601.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- stc
- Assembly
- GCA_004785975.1
- Location
- SMLS01072844.1:1292-7503[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.9 3e+04 -4.1 1.6 15 19 325 329 324 329 0.81 2 16 0.14 2.2e+03 -0.4 0.4 4 10 358 364 357 368 0.95 3 16 1.1e-05 0.17 12.7 13.9 3 19 372 388 364 388 0.87 4 16 0.4 6.2e+03 -1.9 1.0 5 10 413 418 413 418 0.95 5 16 1.1e-08 0.00017 22.3 11.7 1 18 424 441 424 442 0.97 6 16 8.3e-11 1.3e-06 29.1 15.3 1 19 482 500 482 500 0.99 7 16 0.25 3.9e+03 -1.2 1.8 5 10 529 534 529 534 0.96 8 16 3.1e-06 0.049 14.4 13.8 4 19 547 562 540 562 0.87 9 16 1.3 2e+04 -3.5 2.0 5 10 591 596 591 596 0.93 10 16 2 3.1e+04 -5.0 14.9 1 11 602 612 602 624 0.88 11 16 4.1e-09 6.5e-05 23.6 13.4 1 19 629 647 629 647 0.98 12 16 2 3.1e+04 -4.5 1.4 6 10 676 680 676 681 0.66 13 16 0.00054 8.4 7.3 11.4 10 19 694 703 686 703 0.88 14 16 0.022 3.5e+02 2.1 0.5 6 11 706 711 705 712 0.94 15 16 1.1e-06 0.017 15.9 15.0 1 18 739 757 739 762 0.92 16 16 0.00012 1.8 9.4 13.7 3 19 769 787 768 787 0.93
Sequence Information
- Coding Sequence
- ATGGCAAATTGGAATCCTAGTAACTATTATTTGAATCAAGAACAACAGTTTAATGATAACCAACATCACAGATTCTATTCCACTAACTTACATGACACTGCATGCTTTAATCGTTCTGAATCATATGGAAATAATCAAAATGCAGTACATAATCATCCCATACCAGATACTTTCTCCGCTAGACCACTTAACCATGGGGGAATAAGTAGTTCTACTAatcatatttcaaattacatCGACATCTCGCAATCTAATTTAACACCTACAGCTGCAGAATTTAAACCAAGAAATCAAGCAGGTACTTCTAGTTCAAGTAATATAAGCAGTAATGGAACAGTAAAAAGACCCCAACAAAATAATAGTAGAAATAGAAagccaaattttgcaaaatctcaGGGATATACAAGACCCTACAGAAAACAGATTATATTAAGTAATACAGCTGATGTAATTGAGCATAAAGAGAATAAAGACATTGCTATACAAAAACAAGATCAAGGTGATGTAAAATATCAAACTAATGATGAACTCAGTAATAGGCGGAAAGAGTTCAGAGAAGGTGATCGGAACTATAAAAGTAGATACAATGACCATTACATAAATAGCAATTTAGAttctaaaaagaaatggaaCAGAAACACACaatatagatataataaaagATATGATAATCAAAGGTATAAAGATTCCGGAACTAAAGAAAGCTGGAGACAACCTTCTAATGGACCAAATGATGTtgataaagataaaaaaatacataaaccaGGGCAGCAATTGATTTTTAAGTGTGCTGCATCCCAACGAGAACGGTTACAAGAAATGCTGGAACACTTCCAGCTGGAATGCATGGTTTGCTGTGATAAACTACGTCATACTGATTTGGTGTGGTCTTGCAAACAatgttataatattttgcatctgAATTGTATAAAACAGTGGGCAAATACTTCCAAAATGGAAACCGGCTGGAGATGCCCAGCTTGCCAAAACAACTACTCGATTGTTCCAAAAGACTATTATTGCTACTGTGATAAGGtcataaatccaaaatatgaaccTGGAAGTTTACCACACAGTTGTGGGGAAATATGTGGACGTAAAGGAAGAAGCTGTGATCATACCTGTGTACTGCTTTGTCACCCTGGGCCGTGTCCTGATTGTACTGTTCCAGTATCAAGAGCATGTGGTTGCGGTGCTACAAAAGCCACAGTGACATGCGGTACAGATGTGCCAGTTACTTGCCAAaatatatgcaataaaattCTGAATTGTGGCGTACATACTTGTTCAAAGACATGTCATCCTGGTGACTGTCGTTATTGTGAAGCTTTTGTCAAGCAAGAATGCTATTGTGGTAAATTGGGACGCAAGTTACTTTGTACTTCTGAAATTCAAGGAgctgaatattttaaatgcgGTGAAATTTGTGGTAAATTGTTAGTGTGTGGTAATCATAAATGTCAATTGGTTTGTCATTCTGGATCTTGTCCACCATGCCCGACTTCAGTTGATATAATTACTACATGTCCATGTGGTCAAACAAAGCTAACTATAGTTAGAAAATCATGCCTAGACCCTATTCCTACTTGTGAAAAGGTGTGTAATAAAACATTCACTTGTGGACAGCCAAGTGATCCACATCGTTGCCAGAGTAAATGCCACAATGGTATTTGTCCTACCTGTCCACTAACAACAGTTGTGAAATGTCGTTGTGGTTATATGGATAGAGAAATAGCTTGTAAAAAGGTTACTAGTAAAGCAGATGATGCTCGCTGTGAGAAGAAATGTACAAAGATGCGACATTGTTGCAAACACAAATGCAATCAGCTTTGTTGTATTGAAGTAGAACATATTTGTCCTCTACCTTGTAATCGCTCACTATCTTGTGGTTTACATCGATGTGAAGAAGGTTGTCATAGGGGACGTTGTCCACCTTGCTGGAGATCTAGCTTTCAAGAGTTGTATTGTGAATGTGGAGCTAGTGTTATTTATCCACCTGTGCCATGTGGTACTAAGCCTCCAATTTGTAATAAACCTTGTCCACGTATTAGAGAATGCGGTCACGATGCTTTTCATAATTGTCATACAGGTCCATGTCCTCCATGTACAGTTTTATGTAAGAGATTATGCCACGGAAAGCATGAACAAAGAACTACGATCCTTTGTCATCAAGATGACTTTAGTTGCGGATTGCCTTGcgGGAAAAATATGGCATGCGGGCAACATAAGTGCATTCAACTTTGTCATGCTGATGATTGTCCATCTCCGTGTTTGCAGCCATGTCCAAAAATTCGACAAAACTGTGAACATCCATGTAACTTACCATGTCACGATGGAGAATGTCCCGATGTACCCTGTAAGCAGACTGTACGGGTTACTTGTCAGTGTGGCTTAAGATCTTCAACAAGAACCTGCATGGATTTAACAGGGGAATATCAAAGCATCACTATGGTGCAACTTGCTTCGAAAATAGCAGATATTCAGAAAGGTCAAGCAGTGGACATCACCGACATTGTGGGCAGCCAAAAGAAATGTGGAGCACCAAAAACGTTGGAATGCACTGAAGAATGTCGCGTCGCAGAAAGAAATAGACGTCTAGCTATAGGGCTACAAATAAGAAACCCAGATTTGAGTGCCAAATTAACGCCACGATATTCAGATTTCATGAGAAACTGGGCAAAAAAAGATAGTAGATTTTGTCAACATGTTCATGATAAACTTACAGAACTTGTGCAAAAAGCAAAGCAGAGTAAGCAGAAGAGTCGTTCACATTCTTTTGAAAGTATGAATCGCGATAAGAGATTATTTGTTCACGAATATTGTCAGATGTTTGGGTGTGAAAGTGAAGCTTACGATGCTGAGCCTAATCGTAATGTCGTCGCTACTGCCTACAGAGATAAGTCATGGTTACCAAGTATCGGGCTTTTGGAACTCATTCAACGAGAAAATGGTCAACGTAAAGTGCCTGGTCCTGTCCtagaaaataaacataacattcTCCCAAAACGAGAGCTGGTTCCATTAAAATCTAGTAAAATGAATAATTCTTTTGCCCCTTCAGGAGAGTATGTAGATTATTTTGATGATCCACCAATTTAG
- Protein Sequence
- MANWNPSNYYLNQEQQFNDNQHHRFYSTNLHDTACFNRSESYGNNQNAVHNHPIPDTFSARPLNHGGISSSTNHISNYIDISQSNLTPTAAEFKPRNQAGTSSSSNISSNGTVKRPQQNNSRNRKPNFAKSQGYTRPYRKQIILSNTADVIEHKENKDIAIQKQDQGDVKYQTNDELSNRRKEFREGDRNYKSRYNDHYINSNLDSKKKWNRNTQYRYNKRYDNQRYKDSGTKESWRQPSNGPNDVDKDKKIHKPGQQLIFKCAASQRERLQEMLEHFQLECMVCCDKLRHTDLVWSCKQCYNILHLNCIKQWANTSKMETGWRCPACQNNYSIVPKDYYCYCDKVINPKYEPGSLPHSCGEICGRKGRSCDHTCVLLCHPGPCPDCTVPVSRACGCGATKATVTCGTDVPVTCQNICNKILNCGVHTCSKTCHPGDCRYCEAFVKQECYCGKLGRKLLCTSEIQGAEYFKCGEICGKLLVCGNHKCQLVCHSGSCPPCPTSVDIITTCPCGQTKLTIVRKSCLDPIPTCEKVCNKTFTCGQPSDPHRCQSKCHNGICPTCPLTTVVKCRCGYMDREIACKKVTSKADDARCEKKCTKMRHCCKHKCNQLCCIEVEHICPLPCNRSLSCGLHRCEEGCHRGRCPPCWRSSFQELYCECGASVIYPPVPCGTKPPICNKPCPRIRECGHDAFHNCHTGPCPPCTVLCKRLCHGKHEQRTTILCHQDDFSCGLPCGKNMACGQHKCIQLCHADDCPSPCLQPCPKIRQNCEHPCNLPCHDGECPDVPCKQTVRVTCQCGLRSSTRTCMDLTGEYQSITMVQLASKIADIQKGQAVDITDIVGSQKKCGAPKTLECTEECRVAERNRRLAIGLQIRNPDLSAKLTPRYSDFMRNWAKKDSRFCQHVHDKLTELVQKAKQSKQKSRSHSFESMNRDKRLFVHEYCQMFGCESEAYDAEPNRNVVATAYRDKSWLPSIGLLELIQRENGQRKVPGPVLENKHNILPKRELVPLKSSKMNNSFAPSGEYVDYFDDPPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -