Pjap017834.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- prdm10
- Assembly
- GCA_004785975.1
- Location
- SMLS01039281.1:3-2832[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.1e-06 0.0014 19.8 2.5 1 23 428 450 428 450 0.99 2 10 0.19 28 6.2 0.0 2 23 502 526 501 526 0.92 3 10 0.0032 0.48 11.7 2.1 2 23 542 564 541 564 0.95 4 10 0.00097 0.15 13.4 0.1 2 23 572 593 571 593 0.97 5 10 0.018 2.8 9.4 3.2 2 23 602 623 601 623 0.97 6 10 0.0017 0.25 12.6 0.2 1 23 630 652 630 652 0.97 7 10 0.00056 0.084 14.1 1.9 1 23 658 681 658 681 0.96 8 10 6.1e-05 0.0091 17.2 1.3 1 23 686 708 686 708 0.97 9 10 0.00065 0.097 13.9 4.0 1 23 714 737 714 737 0.89 10 10 3.3 5e+02 2.3 0.3 1 13 773 785 773 787 0.89
Sequence Information
- Coding Sequence
- ATGGAGAGTGTAATCGAAGGACATTCAAATGAAACCATTTCCTTAGCCGTAGATGGTTTAGTTTGGAATGGAGCTTCAAATGCAAACAATcagaatatattgtatatagcAGTAGAATATGTTAAAGATAATGATTTTAAACTCGATCAAGATCGACCTTTATCacctcaaaatatttacaatgacCTGGAACAACATGTTAGTCCGTTGGATCCTAACATGAGTTCCGTAGCACAATACAGCCCTGTTTACGCATCAGATTCATCAGCTCCGTATAATAACCCTATAGTCGTAACACAATTGGTCGCAAACAATCCTGAAGTTTCAACATCTTTATCGCTTTCAAATAATTCCACCGAATTAGGACGGGTTGTCTCTACTAAATATCTGCATATGATAAATGAGCAGTTGATTAATGAAAGTAATGTACAGACACCTTCAAGTTTATCGCAAAATGTTGATTCGGAACAGGAAGTTGAATTACTTATTACTGACCAAAATACAGGTATTTCTTACAGTGTGAGTACGCAGGAATATTTAGTAGAAAGATGTTTAGCTGACGAGCAACAATTACTTGATAATTTATCAACGGAAACATTATTAGATTCAGATCTTTTAGCTTTAGatgaaaatgcattaaaatcttctttatcagaaataataatagaaccAACCAACCAAAAATCTCAAATTGTGAATTACGGACAATCTTCTTTAAACGGtattaaaaaggaaataaatgaGATTGGTGAGATACGCAGGTCATCTAGAAATATTGACTGTAATGACGACGTGGATATAGATGAAAAAATTTTATCTCATGTACAATCTATAATTGATAAGCCAGTACCGACTAGAGCGTGGGCTACTTTAcctgaaaattatttaagtattaATAAGCTACAAAATGGAGAATATGGAGTTTTTGCTAAGAAAacgatatataaatatactcaATTTGGTCCATTGGAAGGAGTATATAGGAAGCAAAATTTTAAGGTTGAGGAAAACAGGTTGGAATTATTTGTGGTTGTGGCGAATGGACAATGTATTAAGCTGGATACCTCAGatgaaaCTACTTCTAATTGGATGTGTTTCGTACGACGGGCAGAAACATACGAAGAACAAAACCTTGTGCTTATTCAACAAGATGGTTCGTTATATTAcgttacaaaagaaaatattctacCTAAACAAGAATTAAAGGTGGGATATAGTAAAGCTTACGCACAACAATACAGTTTATCGATATTAGAACCGATTACCAACGAGAATAACATGTATCAGTGCTTCGAGTGTTCCGAGAAATTTTTTACATCGGAACAGTTACAAAAACACTTAAATACACACGACCAATCTAATGGAGAGATAAAACATcgaaaaaagagaaagaaactGCCACTTGCGAGGAATCTTAAGCCTGAATTTGTAGCTTGTGACATGTATCGACATGATGACAGTGGAAATATGTTGAATGGTATTGAGGCTACGATGAAGAAATGGCCGTGTACATTTATAGGATGTGATGCAATTTTTGACGAAGAGAATCTCCTGAATAAACATTATACTAAAGCGCATCCTACAACCGGTGCTAAAAATGGTGGTGTAGAAGAAACTTCACTCACATGCGAGCATTGTAAAGATAAATTCACAAGCGAGAATGAATTGAAGAATCACATTTCCGTGAAACATCAAACTAAcgataagaaaaaaaagtgcCCTGTTTGTTATAAAGTATTTGCTTCTATTGATCGAGTGCAGaGCCATATGCTAGTGCACGGATCGGATGAACTTAAACCTTTAAAGTGCGATAAATGTAATAagagatttttaaataatagcgCTTTAGCTTGCCATTTAAAGACCCATATGCCTGGTCGTAAACAATTTGAATGCCCAATTTGTAGGGAAACATTCGACTATGTCCTCCAATTAAAGTTACATGTGCAACAGCATTGTACAAACGGGCAGTATACTTGCCCGCATTGCGAGAAACCTTTTTCTAAGTATAGCATTATCAGAAAGCATATAAGGGCTTTCCACTGCGAGAGGAGACATCCGTGTCCAAATTGTTCGAAAAATTTCCCTACCCTGGACAAACTACGGATGCATTTACTGAAACATTCTGATCATAGAGAGTTCTTATGCGCAGATTGCGGCAAGCAGTTTAAAAGGAAAGATAAATTGAAAGAGCATTGTAAGAGGATGCATTCTGAGGAACGTGAAAATGCTGTGCCTAAGCAGAAAGTTAATAATATACAATCATCTAAGAAATTTATACCAAAAGTGCAACCTACTGATTATCATAGGTTTATATATAAATGTCACAGCTGTTTAGTAGGATTTAAACGCAGAGGTTTGTCTCAGCTGTAG
- Protein Sequence
- MESVIEGHSNETISLAVDGLVWNGASNANNQNILYIAVEYVKDNDFKLDQDRPLSPQNIYNDLEQHVSPLDPNMSSVAQYSPVYASDSSAPYNNPIVVTQLVANNPEVSTSLSLSNNSTELGRVVSTKYLHMINEQLINESNVQTPSSLSQNVDSEQEVELLITDQNTGISYSVSTQEYLVERCLADEQQLLDNLSTETLLDSDLLALDENALKSSLSEIIIEPTNQKSQIVNYGQSSLNGIKKEINEIGEIRRSSRNIDCNDDVDIDEKILSHVQSIIDKPVPTRAWATLPENYLSINKLQNGEYGVFAKKTIYKYTQFGPLEGVYRKQNFKVEENRLELFVVVANGQCIKLDTSDETTSNWMCFVRRAETYEEQNLVLIQQDGSLYYVTKENILPKQELKVGYSKAYAQQYSLSILEPITNENNMYQCFECSEKFFTSEQLQKHLNTHDQSNGEIKHRKKRKKLPLARNLKPEFVACDMYRHDDSGNMLNGIEATMKKWPCTFIGCDAIFDEENLLNKHYTKAHPTTGAKNGGVEETSLTCEHCKDKFTSENELKNHISVKHQTNDKKKKCPVCYKVFASIDRVQSHMLVHGSDELKPLKCDKCNKRFLNNSALACHLKTHMPGRKQFECPICRETFDYVLQLKLHVQQHCTNGQYTCPHCEKPFSKYSIIRKHIRAFHCERRHPCPNCSKNFPTLDKLRMHLLKHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENAVPKQKVNNIQSSKKFIPKVQPTDYHRFIYKCHSCLVGFKRRGLSQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00956565; iTF_01121102; iTF_00626527; iTF_00627674; iTF_01499159;
- 90% Identity
- -
- 80% Identity
- -