Basic Information

Insect: Popillia japonica
Gene Symbol: -
Assembly: GCA_004785975.1
Location: SMLS01072806.1:66651-67835[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00019 0.029 15.6 1.2 2 23 176 197 175 197 0.95

2 7 1.9e-05 0.0028 18.8 0.7 1 23 203 225 203 225 0.98

3 7 0.00035 0.052 14.8 5.5 1 23 231 253 231 253 0.98

4 7 6e-06 0.0009 20.3 0.2 2 23 260 282 259 282 0.94

5 7 0.00017 0.026 15.8 0.7 1 23 288 310 288 310 0.97

6 7 0.00011 0.016 16.4 4.4 1 23 321 344 321 344 0.97

7 7 0.0003 0.045 15.0 5.3 1 23 351 373 351 374 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00019	0.029	15.6	1.2	2	23	176	197	175	197	0.95
2	7	1.9e-05	0.0028	18.8	0.7	1	23	203	225	203	225	0.98
3	7	0.00035	0.052	14.8	5.5	1	23	231	253	231	253	0.98
4	7	6e-06	0.0009	20.3	0.2	2	23	260	282	259	282	0.94
5	7	0.00017	0.026	15.8	0.7	1	23	288	310	288	310	0.97
6	7	0.00011	0.016	16.4	4.4	1	23	321	344	321	344	0.97
7	7	0.0003	0.045	15.0	5.3	1	23	351	373	351	374	0.95

Sequence Information

Coding Sequence: atggaaattaatattttaaataaatgcagaGCTTGCCTAACAGAAAAAGCAGTAATGTTACCTTTATTCGATACATACGAAAATGACCTCACGTTGGCCgacataatacaacattttttaaatacacaacTCAACTTGTACGACAACTTACCAAAACGTATTTGTGAAGAATGTGCAACATATTTAATCCAATTCTATAACTTCTCAGTGGTATTTACAGAAAGCAACTTAAAACTTTCTAATCTTATCGAGaacaataaacttttatttgaaaataaggATTTCGAAATATCaacagaaattaatatttgCCATAAATATGAGGAAGATGATcttcatttaaaattagatGCTGCTAGTGCAGAATCTACAGGAGacgaaaacaaattttgtgatatAGTtagtagttataataataataatgataatgaaatATTAGTGAAGGTAGAGAATGATGATGATTACGAAGAAATTGTTATACGTACTAGCAATGAGCAAACTAATATTTCGGATGATGATCATTGTAGATGTGTTATATGTgacaaaaattttccaaacttgCTATTGTTAAGAAACCATCTGCAACTGCatataaacaataagaaatttatATGCGAGGTATGCGGTTATACCACAATGAAGAAATCATATTTATCCGACCACATGCAAACACACTCCTCAAGTAGACTTTTCGAATGTAATATGTGCAATAAATCGTTTCGGTGTAGATCAGCATTTTCTAGGCATAAACGTATTCATACGAATCCAAAACAAATCGTGTGCGAAATGTGCGGGCAAAAATTTACAGATAGGGGAACCTTAAAAACACACATTCTATTGTTGCATTCTAAAATTAGAGactttaaatgtattatttgtaaTCAAAGTTTTCCACTTAAAGCTACGTTAATGAAGCATGTACGCAGACACCAACAGAAGGAAGGAGCTGCTAAAAAGAATTTTAAGTGTACAGAGTGTAATATGCAGTATTTTGATAAATCAAGTTTAAAAAGACATTATTTTACGAAACATAGTGGTgaatacattaaatttaaatgtcaaatttgttttaagGAATATACAACAAAAGCAAGTTTGGAAAAACACAACCATGTCCATcacaaattctaa
Protein Sequence: MEINILNKCRACLTEKAVMLPLFDTYENDLTLADIIQHFLNTQLNLYDNLPKRICEECATYLIQFYNFSVVFTESNLKLSNLIENNKLLFENKDFEISTEINICHKYEEDDLHLKLDAASAESTGDENKFCDIVSSYNNNNDNEILVKVENDDDYEEIVIRTSNEQTNISDDDHCRCVICDKNFPNLLLLRNHLQLHINNKKFICEVCGYTTMKKSYLSDHMQTHSSSRLFECNMCNKSFRCRSAFSRHKRIHTNPKQIVCEMCGQKFTDRGTLKTHILLLHSKIRDFKCIICNQSFPLKATLMKHVRRHQQKEGAAKKNFKCTECNMQYFDKSSLKRHYFTKHSGEYIKFKCQICFKEYTTKASLEKHNHVHHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -