Pjap011928.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01026153.1:2099-3811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.072 11 7.5 0.4 3 11 247 255 245 267 0.82 2 9 7.8e-06 0.0012 20.0 5.1 1 21 273 293 273 295 0.96 3 9 1e-05 0.0016 19.6 2.2 1 23 301 323 301 323 0.97 4 9 3.2e-06 0.00048 21.2 1.6 1 23 329 351 329 351 0.99 5 9 0.0001 0.015 16.5 3.7 1 23 357 380 357 380 0.93 6 9 2.2e-06 0.00033 21.7 1.1 2 23 390 412 390 412 0.96 7 9 1.2e-05 0.0018 19.4 0.8 1 23 418 440 418 440 0.97 8 9 6.9e-06 0.001 20.1 2.9 1 23 446 468 446 468 0.98 9 9 0.046 6.9 8.1 9.7 1 23 474 496 474 497 0.94
Sequence Information
- Coding Sequence
- ATGACTGATAATCTTGAAATAATCTGTCGAACATGTTTGGAGCCCACCAAAGAATcttataatatatttactcatacgagtaataataatttaatatcatttttaatcATGGATTGTACACCAATGAGGgTGTCAGTAAATGATGGATTTCCACCAAATGCTTGTACCAATTGCATTGCAAAACTAAATTTCATATATGATTTTAAAACAACGGTGATGAAATCAGATCGTAAATTGCGTCAATTTTATACAAACGACATCTCTAAAACAAAGGAAGACTGTGGAGATCAAAGAACTGATACATCTTCGATGCTTAAATCTGAATTAAATGAATTAGAATCGGCAAAAGGTAACAGTGatgtaaatgaaaatgaatcAGTTTTGTGCGATCCTTTAGTTTTAAACGATCTGTCCACCCAAGAAGATGATATTTATATGGAATGTAACAGTGATGACAAACTAATTGAATTTGAACCTATTATGAAGGAAGAGCCATTGATTCAACCCGAAATGAATCTAGAAAATGCCTGTGAAACTAGCGAGGTTCGTTTGGAATCTACATTCGAAGAGTTGAACAAGGACAGGGAGATTAGTACAGGAGgtgtaaaaataatgaaaagagTTCTTTTTACTAACAATGTCAACAAACAACAGGTTGAGCTACTAAACAATGCAGATTATAACAGAATAATGTCAATGGGTCTTACTAAGGAGGAAAGAAACCGTATGACTATATTTTGTCCAGATTGCAATAAGTCGTTCGCGTTCGGATATTTTGTTGGCGTCCATGCTCACCTCCATACAGGCAATTTACTTTTTAAGTGCGAAAAATGTGATAAGCGTTTCCCAAAGCAGAGCACACTAAATAGCCACATGAGATGTCATGCGGAAAGTAAAGACTTTCAATGCGAGGAATGCAGCAAatcatttaaaacattaaatacaCTACGAGTGCATAAAACTTCACATACAAACGAACGGTCCTATAAGTGCAATCTCTGCACTAAGGCTTTTAAAAACAGTATCGGATTGCAGATGCACACACGCAGACATTTGAAGCAGAAGACTCACGTTTGCGAAATTTGCGGTCAATCTTACACCAATAGCAGCGATTTATACAGTCATCACATACACAATCACTCCACCGACCGTTCGAATAGGACTGCCTCATGCAAAACTTGCGGGAAAATTTATACGGATAGAAGCAGTCTTCTCAGCCATATTAGGAGACAGCACGAGGGGAAACGACCGCACGTTTGCGAACAGTGCGGTAAATCGTTTTTTCAAGCGATGGTGCTCAAGCAACATATGCTGATACATACCGGCGAGAAACCGTACGCTTGCCGATTATGCGGAAAGAAGTTCCGACAAAAAGGATGTGTCACGCAGCATATGAGGATACATACCGGCGAAACGCCGCATCCTTGCAAATTTTGTACCGCTGAGTTTAAACATTCGCATCATTTGCGGGGACATATTAAAGCACATCATAAGGATGAGGTGGAGAAATAG
- Protein Sequence
- MTDNLEIICRTCLEPTKESYNIFTHTSNNNLISFLIMDCTPMRVSVNDGFPPNACTNCIAKLNFIYDFKTTVMKSDRKLRQFYTNDISKTKEDCGDQRTDTSSMLKSELNELESAKGNSDVNENESVLCDPLVLNDLSTQEDDIYMECNSDDKLIEFEPIMKEEPLIQPEMNLENACETSEVRLESTFEELNKDREISTGGVKIMKRVLFTNNVNKQQVELLNNADYNRIMSMGLTKEERNRMTIFCPDCNKSFAFGYFVGVHAHLHTGNLLFKCEKCDKRFPKQSTLNSHMRCHAESKDFQCEECSKSFKTLNTLRVHKTSHTNERSYKCNLCTKAFKNSIGLQMHTRRHLKQKTHVCEICGQSYTNSSDLYSHHIHNHSTDRSNRTASCKTCGKIYTDRSSLLSHIRRQHEGKRPHVCEQCGKSFFQAMVLKQHMLIHTGEKPYACRLCGKKFRQKGCVTQHMRIHTGETPHPCKFCTAEFKHSHHLRGHIKAHHKDEVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -