Basic Information

Insect: Popillia japonica
Gene Symbol: -
Assembly: GCA_004785975.1
Location: SMLS01046100.1:3608-5290[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.29 44 5.6 2.1 2 19 101 118 100 122 0.91

2 15 0.012 1.7 10.0 1.3 1 23 128 150 128 150 0.96

3 15 0.00036 0.054 14.7 1.6 2 23 158 181 157 181 0.91

4 15 2.8e-05 0.0041 18.2 1.8 1 23 185 207 185 207 0.98

5 15 2.4e-05 0.0036 18.4 1.5 1 23 213 235 213 235 0.98

6 15 0.0019 0.29 12.4 0.7 1 23 249 271 249 271 0.95

7 15 0.049 7.3 8.0 1.4 1 23 275 297 275 297 0.97

8 15 0.017 2.5 9.5 2.7 1 23 303 325 303 325 0.98

9 15 0.0003 0.045 15.0 4.3 1 23 331 353 331 353 0.98

10 15 4.7e-05 0.007 17.5 3.1 1 23 358 380 358 380 0.98

11 15 0.055 8.2 7.9 1.7 2 21 387 406 386 410 0.90

12 15 5e-06 0.00075 20.6 3.0 2 23 415 436 414 436 0.97

13 15 0.0082 1.2 10.5 0.4 1 23 442 465 442 465 0.94

14 15 1.2e-05 0.0018 19.4 1.2 1 23 499 521 499 521 0.98

15 15 6.1e-06 0.00092 20.3 4.3 1 23 527 549 527 549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.29	44	5.6	2.1	2	19	101	118	100	122	0.91
2	15	0.012	1.7	10.0	1.3	1	23	128	150	128	150	0.96
3	15	0.00036	0.054	14.7	1.6	2	23	158	181	157	181	0.91
4	15	2.8e-05	0.0041	18.2	1.8	1	23	185	207	185	207	0.98
5	15	2.4e-05	0.0036	18.4	1.5	1	23	213	235	213	235	0.98
6	15	0.0019	0.29	12.4	0.7	1	23	249	271	249	271	0.95
7	15	0.049	7.3	8.0	1.4	1	23	275	297	275	297	0.97
8	15	0.017	2.5	9.5	2.7	1	23	303	325	303	325	0.98
9	15	0.0003	0.045	15.0	4.3	1	23	331	353	331	353	0.98
10	15	4.7e-05	0.007	17.5	3.1	1	23	358	380	358	380	0.98
11	15	0.055	8.2	7.9	1.7	2	21	387	406	386	410	0.90
12	15	5e-06	0.00075	20.6	3.0	2	23	415	436	414	436	0.97
13	15	0.0082	1.2	10.5	0.4	1	23	442	465	442	465	0.94
14	15	1.2e-05	0.0018	19.4	1.2	1	23	499	521	499	521	0.98
15	15	6.1e-06	0.00092	20.3	4.3	1	23	527	549	527	549	0.98

Sequence Information

Coding Sequence: ATGGATGCACAAATCGACACCCCTCCCGATAAAGTTAAACAAGAAATCGATGGTGAAATAGATTTAGTTGAGCCGTACATCGCACCATTAAAGATTAAAATTGAACCGGAAGAGGACGAACAATATTCCAAGCATAAATTCGAATTTGTAGCTTTAGATCCTCCCGTAGATGCGTCAGACACTTCGAACAACTCGCATCCACAGATAAAAAAGCCTCAAATACAAACGGAGACATCTCAAACTTTAACGGAAAGCTTCGAAGAAGTTACTATAAAAGAAGAGGTTGAATTTACGATAACATATTGCGAGATGTgtaatatgaaatttaataaagagGAGGATTTCGAGGAGCATTGCACCTTACATAATAAGAGAAGTACGTATTTTTGTTCCgtttgtttagaaatatttaaaacgaaaaGAAGTATTGAGAAACATTTTGTGACGCATCGAGAAATATCGGTGCTCAGTAAATGTAATTTATGCAATTATACTTTCGCTTCGAGAGAAGACTTAAATATGCATAGCAAAACGTTCAAACATATAAAACAGTTTTCGTGTGACGTATGTGAAAAACGATTCTTCCTAAAAAGCAATTTAACTATACATAAAAGGCTGCATACCAGCAAGAACATTTTCGAATGCAATATTTGTCAGCAGAAGTTTGCCAGGCGATTATTCCTAGAGAATCACatgaataaacataaaaatgacATTAAACGATCGAAAGAGAAAACTCGAAGTTATCGCTGTTTACGTTGTGGATTTTCTACGAAAAATGAATCGGAGCTTACTGAGCACAATATTAATCATATCCCAATATTTAAATGTCGTAAATGTGAATTTACAGCGAAAACCTATGCCGAAGTTCGCAAACATCGTGATATTCATCTAGCGGATGTAACTTTTAAATGTGAATTGTGCCCGTATGaaacacacaaaaaatataGACTTACAGAACATCAGGCTACACATTACGATGTTAAACCGCACGAATGTCACATCTGTAAAGTTAGATTGAGTACCCGGAATAGTCTAATGAGGCATATAAAATCTCACACTGATGGCAATTTCGAATGTAATTTGTGCAAGAAATCATTTAATTTGATGAAATACTTGAAAGACCACATGAAGCGACATGTGAATAAAGATTTACTCGAGTGCGAAACGTGCGGATTCAAGTGTTATAAAAAGTACGATATGAATATACATCAAATTGAACAGAaccataaaaaaatgcaaaaatgtgAGATATGCGACAAAGTATTTACAACAAAGCATTCGTATAAGCTTCATTTAAGCATGCATGCTGGACATGAGAAATATGAGTGTATCGTGTGTCAAGAGAAGTTTGTTTTGAGTCGACAGCTATTGCAACATATGAAATTAACACATCCCGAAGCCAAACCGCtcaaatgtgatgtttgtgaGTATACATCGTTTGTAACAGCAATTTTCGAGAAGCATAAAGTTAGACACCAAGAAGTTAAACCGTATgtttgcaatatatgtaaagTTGGTTTTAATTATAATCAAAGCTTAAAAAAGCATATGACTTCACATCTCGGACTGACTCCATACGAGTGTAAATTATGCGACAAGAAATATAGTAAGCATGACAGTTTGAAGCAGCATATGTTGAGACATTCCCGTGATAAGGCAGGCAAGGAAAAatcaaattag
Protein Sequence: MDAQIDTPPDKVKQEIDGEIDLVEPYIAPLKIKIEPEEDEQYSKHKFEFVALDPPVDASDTSNNSHPQIKKPQIQTETSQTLTESFEEVTIKEEVEFTITYCEMCNMKFNKEEDFEEHCTLHNKRSTYFCSVCLEIFKTKRSIEKHFVTHREISVLSKCNLCNYTFASREDLNMHSKTFKHIKQFSCDVCEKRFFLKSNLTIHKRLHTSKNIFECNICQQKFARRLFLENHMNKHKNDIKRSKEKTRSYRCLRCGFSTKNESELTEHNINHIPIFKCRKCEFTAKTYAEVRKHRDIHLADVTFKCELCPYETHKKYRLTEHQATHYDVKPHECHICKVRLSTRNSLMRHIKSHTDGNFECNLCKKSFNLMKYLKDHMKRHVNKDLLECETCGFKCYKKYDMNIHQIEQNHKKMQKCEICDKVFTTKHSYKLHLSMHAGHEKYECIVCQEKFVLSRQLLQHMKLTHPEAKPLKCDVCEYTSFVTAIFEKHKVRHQEVKPYVCNICKVGFNYNQSLKKHMTSHLGLTPYECKLCDKKYSKHDSLKQHMLRHSRDKAGKEKSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01253057;
90% Identity: -
80% Identity: -