Basic Information

Insect: Popillia japonica
Gene Symbol: L
Assembly: GCA_004785975.1
Location: ML214443.1:4233-8336[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.4e-08 1.1e-05 26.3 1.3 1 23 74 96 74 96 0.98

2 20 0.014 2.1 9.8 4.6 1 23 102 124 102 124 0.97

3 20 4.2e-06 0.00064 20.8 4.4 1 23 130 152 130 152 0.99

4 20 0.00069 0.1 13.9 1.2 1 23 158 180 158 180 0.97

5 20 4.7e-05 0.007 17.5 4.3 2 23 206 228 205 228 0.96

6 20 0.031 4.6 8.6 0.1 3 23 259 280 257 280 0.92

7 20 0.003 0.45 11.8 2.1 1 23 315 338 305 338 0.97

8 20 9.4 1.4e+03 0.8 1.4 2 23 396 417 395 417 0.90

9 20 0.0064 0.96 10.8 0.1 2 23 429 450 429 450 0.96

10 20 0.0036 0.55 11.6 6.8 3 23 460 481 459 481 0.93

11 20 0.027 4.1 8.8 0.2 1 23 486 509 486 509 0.92

12 20 0.017 2.6 9.5 1.3 1 14 572 585 572 595 0.89

13 20 0.016 2.4 9.6 1.5 1 23 648 671 648 671 0.92

14 20 0.0002 0.029 15.6 3.5 2 23 686 707 685 707 0.96

15 20 0.0018 0.28 12.5 0.4 1 23 717 739 717 739 0.98

16 20 1.6 2.4e+02 3.3 2.8 2 23 747 768 747 768 0.96

17 20 0.47 71 4.9 0.3 1 13 816 828 816 829 0.87

18 20 0.24 36 5.9 0.2 2 23 901 922 900 922 0.94

19 20 0.00043 0.064 14.5 0.1 1 23 930 952 930 952 0.97

20 20 0.0035 0.52 11.6 0.3 1 23 959 981 959 981 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.4e-08	1.1e-05	26.3	1.3	1	23	74	96	74	96	0.98
2	20	0.014	2.1	9.8	4.6	1	23	102	124	102	124	0.97
3	20	4.2e-06	0.00064	20.8	4.4	1	23	130	152	130	152	0.99
4	20	0.00069	0.1	13.9	1.2	1	23	158	180	158	180	0.97
5	20	4.7e-05	0.007	17.5	4.3	2	23	206	228	205	228	0.96
6	20	0.031	4.6	8.6	0.1	3	23	259	280	257	280	0.92
7	20	0.003	0.45	11.8	2.1	1	23	315	338	305	338	0.97
8	20	9.4	1.4e+03	0.8	1.4	2	23	396	417	395	417	0.90
9	20	0.0064	0.96	10.8	0.1	2	23	429	450	429	450	0.96
10	20	0.0036	0.55	11.6	6.8	3	23	460	481	459	481	0.93
11	20	0.027	4.1	8.8	0.2	1	23	486	509	486	509	0.92
12	20	0.017	2.6	9.5	1.3	1	14	572	585	572	595	0.89
13	20	0.016	2.4	9.6	1.5	1	23	648	671	648	671	0.92
14	20	0.0002	0.029	15.6	3.5	2	23	686	707	685	707	0.96
15	20	0.0018	0.28	12.5	0.4	1	23	717	739	717	739	0.98
16	20	1.6	2.4e+02	3.3	2.8	2	23	747	768	747	768	0.96
17	20	0.47	71	4.9	0.3	1	13	816	828	816	829	0.87
18	20	0.24	36	5.9	0.2	2	23	901	922	900	922	0.94
19	20	0.00043	0.064	14.5	0.1	1	23	930	952	930	952	0.97
20	20	0.0035	0.52	11.6	0.3	1	23	959	981	959	981	0.96

Sequence Information

Coding Sequence: ATGCCGTTTAAGGGCGGGGAATTCCCCGCAGAAGAAATATTAATTGgtgatttattaatgaataaaaGTGATAATAGTGCGGTAAAGGTGCTGAtagGTAGGGCAAGCAGTCCGTCTAGCAGCAACAGATCGTCACCCACGAGTTGCCGTAGTTATACGCTTAGCGATGCAACGGACGGGGATGAAACCTATACTGTGGGGGCCACAGCTACCAACCCTTATGAATGTAATAAATGCAAGAGGGCGTTTACTAGGTCTTCTGAACTAACGAAACATATCCAGATACACGCCGATCAATTGCAGTTCAGCTGTCCGTATTGTCCGAGATTATTTAAGCATAAGCGGTCGAGAGATCGTCATACGAAGCTTCATACCGGcgataaaaaatacaaatgtaCGCACTGCGAATCGGCCTTCGCCAGAAGTGACCATCTGAAGATTCACATGAAGACCCACGACAACAAGAAACCCCACCAGTGTGAATTGTGCAACAGAGGCTACAATACCGCTGCGGCCCTGGCTTCACATCAGCAACACCATGTCAAGAAGGAAGTACGATGCGGAAGCAGTGCTAGCACCGTCACGGCAACCAGTACTCCAAGTCCTGGTTACATAAGGTGCTCGCACTGCTCTGAATCGTTCAGTAAGCCTGAACACCTTCAAAACCATCAACAATCTAAACACGCAAATATTGCAACTAATGCAAGCCAAGATAAACATGTGAACGCGAACCAGCCCAAAGATGATAATAATGTCGATTTCAGCAAAATGGCTTGCATGTATTGTGGACGTGATTTCCCGACAATGAACCAGATGTATCAGCATATAAGTGCGGACCACAGCGCAATTTTTCTGTCGCACAACTTGAACTATAACTCGCAAATATCGCCCAGCTCCAAGGATTCCTTTCCCAAATCGTACCAACAGACGAATTTAACAACGCATTCTTGCGATTTCTGCACGATGAAGTTCGAAACAGCTCAGTCATTGAAAGAACACTTGAAAAATAACCACTATAAAGTTGGCAACTCTGATTCGACATCGTCCGGGCTTCAATCGAGGCCAACCGATCTAAGCAGGAAGAGAAGAGTCGAAGAAACCGAAGAGAATGACAAGAGGAAATTGGAGGAGAAGAGGATTTCGCCGTCATCAAGTAGTCCGTACGATTCAAACGATAAGCCATGTATTTGTTCGTATTGTTACGTACAAATGCCGAATTTTAAGAGTTTTCTGGTTCACATGGAGAGCCACGTGTCACTAAACGCTTCCAATAGCTTCGTCGGTTACTGTCCAATTTGCGGAGAACCGAGTAGGGATTCCATAGAATTTAGCTCCCATATATTTAGTCACGTCGTCACCGATATAACAGGACGTTGTTGTCATCAATGTAAGAAGTCGTTTGATCAACTGGAACAACTACAAAAACACCATTTGGAAGTTCATTCCCAAAACGTCTACAAGTGTACGATATGCGGAGAATTATTCGAGTCGGAAATAGCCATCAAGGTTCACTTCAATAACAGACATTGTACCGAGTGTAAACATTACAGATGCAATTTGTGTTCGCAGCAGTATTTTCACGATAAATTAACCGCCGAACTGCACGTCTCGATGAGACACGGAACTCAATTGAATAACACAAGACCCGAACAACATAGGAACTTTTTCGGGTTGAAATATTCCGGCGGAAGAGCAGATATGCTGTACAGGACGTATCAATGTCCGTTTTGTCAGAAATCGTTTAGAGACGAATATATGCATCGGTTTCACGTATTAAAGGAACACGACACTATTGACAGTAGAAAGGCTGAAAGTTTACTAATGGATGCTTGCGGGCTATCTACAAGTTCGCCTAGTTTCTCGTATAGATCTCTAACCTCACCAACACCTCTACCTCCTCAAGAAAACCTCGATCGAATCGATTCGAAAGCAGTAGGATGTCATTCCTGCGAGATATGCCATCGCGTGGATTTTACAACGGAAGCGGAATTGTTGTCGCACATGAAAATTCATCAAGGTGCGCATGCCAAGTCCAAAGTTGGAAGTGTTAGCTTACAGTGTGCCTATTGTAACGAACACTGCAAGTCACGTAGCGATTTGGAGAATCACATGAAGGGCCATCAGGTTTCGTGCGGAGGTAAAGTCAAACACAAGTGCAATATCTGTGACGATATATTCTCTTCGGCCATAAGTTTAGCCGATCACAAACTAACTCATTGCAAAATCGTGTCCGGCAATACATGTACTCAGTGCAAAACGGTTTTGAGCGACGAACAGTGCTATTATTCACACCAATTACAACATAACACTAGTTCGACGTTGTCCAAGTCCAATTCTCAGATGACGCTTCCGGCGAATTGCGTCATTTGCTGCCAGACGCTCCAGACCGACATCGAAGTAAAACTGCACGCCAAATTCCACTTGAGACATCTCTTCCAAAAGGAATTCATATGCACGGTTTGCAACAAAGTGTACGATAGCAGAGATATCTGCGAGAAATCGAACGGTACTTCGGTGGCTGTCTGTAAGAATTGCAAAAGTAAAAACGAGGTGGAATTAGACTTTCTAAGGGCGGTACAACAACCGAGACAGGACGCTGAAGACGTCAATGTGCGTTATAACATCCATTGTGTGGGTACCTACGATAAGAATAACGGAGTGATAAAAGCAAATGCAGCATTTGAAGATGTCGACAGTCTCAGATGTAGATTGTGTAGGAGTGTACTACCTTCTAGCTCCAAGTTACAAATCCACCTAATCGAACACAATTTTATGGGCATCGGACAATTTCGCTGTTACATTTGTTCTTCTGTCTTTACGACGGCAGCTGGTCTACAAACGCACATAATCGGCCACGGCCTCAGCCAGAGTCCGTACGAATGCGTCGAATGTAAGATCAAGTTTTTCTTCGAGAGCGAACTGGAAAACCATCGGATAGCACACGCGGCGCCTTCCAATACTCAAGTCGACGATATTAATCAGACCCAGAACGAGAAACAGTACAAGATTTGCTGCTATTGCTCGGGCGCGTTTTTGGATGTATATTTCGCAGAACATGTTGAGAATTGTTGTAAAACCGACGTCAAGACCGAAGTATGTAATGACGAGTACGATAAGAAAGACAATTGCCAAATTGACAATCATAGTTTGGAAGAAGTCATTAAACACGAAAAGGAAGGGTGA
Protein Sequence: MPFKGGEFPAEEILIGDLLMNKSDNSAVKVLIGRASSPSSSNRSSPTSCRSYTLSDATDGDETYTVGATATNPYECNKCKRAFTRSSELTKHIQIHADQLQFSCPYCPRLFKHKRSRDRHTKLHTGDKKYKCTHCESAFARSDHLKIHMKTHDNKKPHQCELCNRGYNTAAALASHQQHHVKKEVRCGSSASTVTATSTPSPGYIRCSHCSESFSKPEHLQNHQQSKHANIATNASQDKHVNANQPKDDNNVDFSKMACMYCGRDFPTMNQMYQHISADHSAIFLSHNLNYNSQISPSSKDSFPKSYQQTNLTTHSCDFCTMKFETAQSLKEHLKNNHYKVGNSDSTSSGLQSRPTDLSRKRRVEETEENDKRKLEEKRISPSSSSPYDSNDKPCICSYCYVQMPNFKSFLVHMESHVSLNASNSFVGYCPICGEPSRDSIEFSSHIFSHVVTDITGRCCHQCKKSFDQLEQLQKHHLEVHSQNVYKCTICGELFESEIAIKVHFNNRHCTECKHYRCNLCSQQYFHDKLTAELHVSMRHGTQLNNTRPEQHRNFFGLKYSGGRADMLYRTYQCPFCQKSFRDEYMHRFHVLKEHDTIDSRKAESLLMDACGLSTSSPSFSYRSLTSPTPLPPQENLDRIDSKAVGCHSCEICHRVDFTTEAELLSHMKIHQGAHAKSKVGSVSLQCAYCNEHCKSRSDLENHMKGHQVSCGGKVKHKCNICDDIFSSAISLADHKLTHCKIVSGNTCTQCKTVLSDEQCYYSHQLQHNTSSTLSKSNSQMTLPANCVICCQTLQTDIEVKLHAKFHLRHLFQKEFICTVCNKVYDSRDICEKSNGTSVAVCKNCKSKNEVELDFLRAVQQPRQDAEDVNVRYNIHCVGTYDKNNGVIKANAAFEDVDSLRCRLCRSVLPSSSKLQIHLIEHNFMGIGQFRCYICSSVFTTAAGLQTHIIGHGLSQSPYECVECKIKFFFESELENHRIAHAAPSNTQVDDINQTQNEKQYKICCYCSGAFLDVYFAEHVENCCKTDVKTEVCNDEYDKKDNCQIDNHSLEEVIKHEKEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -