Pjap018930.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Popillia japonica
Gene Symbol
ZNF236
Assembly
GCA_004785975.1
Location
SMLS01047484.1:507-14632[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.039 5.8 8.3 0.8 2 23 112 133 111 133 0.96
2 25 0.0056 0.85 11.0 1.7 1 23 139 161 139 161 0.97
3 25 0.00052 0.078 14.2 0.6 2 23 167 188 167 188 0.97
4 25 0.0029 0.44 11.9 0.6 1 23 194 216 194 216 0.98
5 25 0.0073 1.1 10.6 0.7 1 23 229 251 229 251 0.96
6 25 5.4e-05 0.0081 17.3 4.0 1 23 276 298 276 298 0.98
7 25 1.4e-06 0.00021 22.3 0.2 1 23 304 326 304 326 0.96
8 25 0.0022 0.33 12.3 0.7 1 23 332 355 332 355 0.96
9 25 0.0039 0.58 11.5 1.8 1 23 365 388 365 388 0.97
10 25 9.2e-07 0.00014 22.9 0.5 1 23 475 497 475 497 0.98
11 25 7.9e-06 0.0012 20.0 2.6 1 23 503 525 503 525 0.99
12 25 0.022 3.3 9.1 4.8 1 23 531 553 531 553 0.98
13 25 0.0014 0.21 12.9 1.0 1 23 564 586 564 586 0.98
14 25 0.00013 0.019 16.2 3.8 1 23 638 660 638 660 0.99
15 25 7.3e-06 0.0011 20.1 1.8 1 23 666 688 666 688 0.98
16 25 0.00014 0.02 16.1 0.6 1 23 694 716 694 716 0.96
17 25 0.00097 0.15 13.4 3.0 1 23 722 744 722 744 0.98
18 25 0.0023 0.34 12.2 0.4 1 21 1078 1098 1078 1099 0.95
19 25 1.2e-07 1.8e-05 25.7 2.7 2 23 1185 1206 1184 1206 0.98
20 25 4.8e-07 7.2e-05 23.8 4.1 1 23 1212 1234 1212 1234 0.99
21 25 0.00049 0.074 14.3 3.0 1 23 1242 1264 1242 1264 0.98
22 25 0.005 0.76 11.1 4.6 1 23 1270 1292 1270 1292 0.98
23 25 0.00012 0.018 16.3 5.2 1 23 1400 1422 1400 1422 0.98
24 25 0.00011 0.017 16.3 1.7 1 23 1426 1448 1426 1448 0.98
25 25 0.0029 0.44 11.9 1.0 1 22 1454 1475 1454 1475 0.96

Sequence Information

Coding Sequence
ATGAAAGCAACACGAAATACGGGAAATGATATTTATACATTACCCATTTCATATAATGTACTACAAACAGCAATgtataatcaaaatttttcaatagaGGTGATGCCAAGTATTATTGCGGAAGCTTCTCAGAAGAATATATATCTGTCTGACACTCCAAAACAGGATGGCAGCAAGATAATGAATCCAATCGAGATTATTAATTCAGtggaaaatgttaatattatatcGCCAGCAGATGGAGAAGTAATCGGATCAGCAACAACTTGTATTATCAATCAagaaagtattttaaacaatagACATATATCagcaaaaactaaagaaaatttgaaatgtgATACTTGTAATAaagaatttgataaaattagtaTCTATAAAAAACATTTGTTGGTACACAGAAATGTAAAAAGGTTTAAATGTGAACATTGTTTTGAAAGCTATAATATTGAGGATAATTATAAGTTACACATGGCATTACACCAGCCAGGTAAACCATCATGCCCTTTATGTAAGCGAGAATTTCAAAGGCTAGCCAGTTTGAAGTCGCATTTACTGATGCATCAAGTTGAAGAAACGTTTGTTTGTAGAGAATGTTTAGCTGAATTTGAGAAGGAGTATGAGTACAACAAACATATGCAGACTCACAGTACAGAAAGACTGAAAATGCTGGAAAATATTCCATATATTTGTTCatattgcaattatttatttgagGATGCAAAAGACTATAAAGAACATGTATCTTATCATATTAAGGTAAGGAAATTGGTTTTCAATCCGAAAAGAACAAGAAGACGTACAACGAACACTAAAGAGTACACTCATAGATGCGCAGTTTGCAGTAAATCGTTCCCTAAGAGATGCTTGTTGGAGAGACATATGCGAATTCATAATGGCGAGAAACCATTTGCATGTCCAAAATGTGATAAAGCTTTTGCACAGAAAAGTACACTTCAAATACACTTAGTAAAACACTCTGGCCATAAACCATACAAATGTACCTTATGTTCGGCTGAATACTTCCAAAAAGgTAATCTTCGTGTACATGTAGAAAAAACTCACACCGCTCCCCCTAATATTGATAAAATGTACAAATGCACCCAATGCACCTGCATCTTTCGAAGAATAGGCTCGCTAAACGGTCACATAACAAAAGCTCATGGGAGTATAAAAACGGAAAGATCTATCGCCGAGTTGACAAATGCGGATGATAAAATTAGGGTTCTGCAGGAAATAGCTGAACAACTGATGTCGAAATCTCTCAAAGATGATGggaataataaatcaattgagAAACCAAACACTGATTTATTAAATGCAGGGGCAAATGAGATTTTCGTCAAATTAGCTGAAAACAGTGCAGATGGTTCAATGAGAAGATATATTGTAAAACAGAGAAAGATTGGAAACATGAAGTGGTTTATCTGTTTATATTGTAGTAAGGAATTCAAAAAGCCCTCGGATTTAATACGACATATTCGAATTCATACAAGAGAAAAACCATATAAATGTAAAATTTGCAATCAATGCTTTGCTTTAAAATCTACATTGTTAGCGCACTTAAATACTCATGAAGGAAAAAGAGACTTCCAATGTTTGATATGTTGCAAATTTTTTACGTCGTCCAAAACTCTCAGTGTGCATGTAAAAAAGCATAGCAAGATTGGTTCGGTGCCTTCATTGAAGTATAAATGTTCGACATGTAGTAAACTCTTTGGCACCCTATCGAAAGTCAGAAGCCATATGGAAGTACATAACTGTAATAATGATGATCTTGAATCAAATTCCGTTAGGCTTAATATCCCTTTGAAGCAGCCTATGATGGAAACAGAAGAAGGTTTAGTAACTGTACCTGCCATAAAACCGCGAATACCTCGTgcagatatggaagaatataaACACAGGCCATTCAAGTGCCATAAATGTAATGCAGCATTCATGAAGCCAGCTCATGTAAAGAGACATATGTTAACACATTCTGGAGAGAGAAATTATAAGTGCGATCTTTGTTCAAAATCATTTACAACATCGTATGCACTTAAAGGCCATATAAAATTTCACGATCCAGAAAAAAGGTTTGCTTGTAGTTTATGTCCGAAAAAATTCGTAGCTaaggatttattaaaaaagcatCAAGTAAAACATTCTTCAGTAAGACCTTATATATGTCCCTATTGCAAAAGACGATTTAAAACTGCTGCATTCTGTCGTAGACATATAAATGTACATAGAAATGATAAGTCTATATTAACCAGTGAATTGGGGGACACCGAAAATCATACTGCAAAGATTATCGATTTTTCAGATACATTAACAGATAACCCATTCGACTTAGAAACAACACTTGATGGAGGGACTATATTTTTAAGGCAACAAGATCCTAACGACTCAGAAAATATAGAGAATTTGGTAACCGAAATAGCTACCCTTCCGCAAGAGAAAGTGACAAAAAGCAAGTCTGCATTGAGAAAAACAGGAAATACGAAACCAGTCACCAATGAATGCACATCAAGCTTGGAAGAACATGAAGTACTAAATCTCCCTAGCAATGCTCAAGTATTTGTTACGAAAGATGGCTTTTATACTATTATCATGCAGGAGCAAAGTAATATAGAATCTAGTGCTGTTAATTCCAATATAGAAGAAAGTGATCAAGGTGTTACAGAATTAGTAAATTATGATGAATATCCACCAGTTAGTAATGATGTATACAATACTCTGTTATCAAATGTGAAGTTACAGAATAATGATCCTATATTAATGAGCACGATTGGAGAATCTCAAGAtaccaatatattatttatggaTCCAACACTATCACAGACAGCTGAATTTCCAAATGAAACTCAAACTTTTGAAACATTTAATCCAACAATATTCAACGGCGGCGTTGATTTACCCTTAGGTGTACAATCAACCGCAGCAAATTCCACTTTTATTCAAAATACTCAAACTATATTGCCTTCAAGGAatgataaaaaatcaaattctttGAAGTTAAGCCTCTCTGATAATAGCCACTTACTCactagtgaaaataaaaaaggtgATAACCCTGTTGATAATTCGAAGTTGCTTTTAACACCAGAGCAGATAAACttaaatgacaatttaattATCACATTAAATGATATTTCTGGTATAAACTTTAATTTGAATAACAGCTTGAATTCTACCGCTgataatttaagtttaaataatattattgatacCGAAATTCAGAATGGTTACATGTGTGCGATTTGTAAGCTCACCTTTGGTACTGAAAATGATTTAGAGAAACATCAGTGCATTGAACCAATTTCGAGTGAATTACATAATAACGAATCTGACGATAGTATGCATGCAATGGAATTGGAAAACATTCAAGAAGATGAACAAATTACTCTAATTACAGATTATAATGATCAGCTTCAGACCACTCATGTGGAAATTTCGACTGACGAACCTAGTACTGACTCAACTGTTGTGAAATCAACAAGCGATGAAATTGATAATAAGAAGTGGACTGTGTGTAACGGAAAAAATAAATCGAAGAAAGCTGATAATAAGTGCACTTATTGTagtaaatcttttaaaaaagcTTCAGATTTGACTCGTCATATAAGAACTCACACTGGAGAGCGACCATTTacgtgtaataaatgtaataagaGTTTTTCACTGAAGTCAACGTTGCAATCTCACCAAAGAACTCACAGTGATACAAGGAGTAGAGATTTTATCTGTTCAATTTGCAGTTACAGCTTTAGTTGCCGTGCTACGCTAAAAACTCATATGCGAATACATACAGgtgtAAAACCGTACGCATGCCATTTATGCAATATGAAATTTAGAACAACATCTAGTAGAAAATCCCATTTATCTACTCATGCAAAATCAAACAGTAAAAGAATGGAATTAGTCAATAATCTCGAAGGCAACCGCTTTGATGAAGCAACTTCGACTAACTTACAACTTATTTTTGGTAGTACAAACACACCATCTGAATCTGTAGAGAATAATGAAGTACAGCATATAGAAAATGTGCCAATAGACCTATTACAACAGTTACAAAATGCCGGTTTTCTATTTACCGAAAGCAGCAGCGATGTGTTAGGCGAAGGATTAATGCAACTTAATTACGACACAGCAAATATAACTACTGTAAATTCGAATACTTCTGTTACAGTAGATGGACAACGGtcaaaaaaatttgaatgtaATTTCTGTCATAAAATGTATACGACGAAAGCGGTTCTAAGAAAACATCAAAAGCGACATAAAAAGGCTTTTCAATGTACTAAATGTGATAAACAATTTGATTTTCAGGATCTATTGGATAAACATGTCAAGCTACATTCAGGATATAGACCATTTTCCTGTACTCACTGTGCTAATAGTTTTAGCGAAGAAGGTAGTCTTAAAACTCATATGAAACGGTGA
Protein Sequence
MKATRNTGNDIYTLPISYNVLQTAMYNQNFSIEVMPSIIAEASQKNIYLSDTPKQDGSKIMNPIEIINSVENVNIISPADGEVIGSATTCIINQESILNNRHISAKTKENLKCDTCNKEFDKISIYKKHLLVHRNVKRFKCEHCFESYNIEDNYKLHMALHQPGKPSCPLCKREFQRLASLKSHLLMHQVEETFVCRECLAEFEKEYEYNKHMQTHSTERLKMLENIPYICSYCNYLFEDAKDYKEHVSYHIKVRKLVFNPKRTRRRTTNTKEYTHRCAVCSKSFPKRCLLERHMRIHNGEKPFACPKCDKAFAQKSTLQIHLVKHSGHKPYKCTLCSAEYFQKGNLRVHVEKTHTAPPNIDKMYKCTQCTCIFRRIGSLNGHITKAHGSIKTERSIAELTNADDKIRVLQEIAEQLMSKSLKDDGNNKSIEKPNTDLLNAGANEIFVKLAENSADGSMRRYIVKQRKIGNMKWFICLYCSKEFKKPSDLIRHIRIHTREKPYKCKICNQCFALKSTLLAHLNTHEGKRDFQCLICCKFFTSSKTLSVHVKKHSKIGSVPSLKYKCSTCSKLFGTLSKVRSHMEVHNCNNDDLESNSVRLNIPLKQPMMETEEGLVTVPAIKPRIPRADMEEYKHRPFKCHKCNAAFMKPAHVKRHMLTHSGERNYKCDLCSKSFTTSYALKGHIKFHDPEKRFACSLCPKKFVAKDLLKKHQVKHSSVRPYICPYCKRRFKTAAFCRRHINVHRNDKSILTSELGDTENHTAKIIDFSDTLTDNPFDLETTLDGGTIFLRQQDPNDSENIENLVTEIATLPQEKVTKSKSALRKTGNTKPVTNECTSSLEEHEVLNLPSNAQVFVTKDGFYTIIMQEQSNIESSAVNSNIEESDQGVTELVNYDEYPPVSNDVYNTLLSNVKLQNNDPILMSTIGESQDTNILFMDPTLSQTAEFPNETQTFETFNPTIFNGGVDLPLGVQSTAANSTFIQNTQTILPSRNDKKSNSLKLSLSDNSHLLTSENKKGDNPVDNSKLLLTPEQINLNDNLIITLNDISGINFNLNNSLNSTADNLSLNNIIDTEIQNGYMCAICKLTFGTENDLEKHQCIEPISSELHNNESDDSMHAMELENIQEDEQITLITDYNDQLQTTHVEISTDEPSTDSTVVKSTSDEIDNKKWTVCNGKNKSKKADNKCTYCSKSFKKASDLTRHIRTHTGERPFTCNKCNKSFSLKSTLQSHQRTHSDTRSRDFICSICSYSFSCRATLKTHMRIHTGVKPYACHLCNMKFRTTSSRKSHLSTHAKSNSKRMELVNNLEGNRFDEATSTNLQLIFGSTNTPSESVENNEVQHIENVPIDLLQQLQNAGFLFTESSSDVLGEGLMQLNYDTANITTVNSNTSVTVDGQRSKKFECNFCHKMYTTKAVLRKHQKRHKKAFQCTKCDKQFDFQDLLDKHVKLHSGYRPFSCTHCANSFSEEGSLKTHMKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-