Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.052 1e+02 3.8 0.2 18 31 93 113 82 118 0.70

2 5 7.3e-05 0.14 12.9 2.2 18 43 134 156 130 159 0.90

3 5 0.018 35 5.3 0.5 9 28 160 179 158 192 0.83

4 5 0.024 48 4.9 1.8 9 28 193 210 183 218 0.82

5 5 4.3e-05 0.085 13.7 1.1 14 35 224 242 214 245 0.72

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.052	1e+02	3.8	0.2	18	31	93	113	82	118	0.70
2	5	7.3e-05	0.14	12.9	2.2	18	43	134	156	130	159	0.90
3	5	0.018	35	5.3	0.5	9	28	160	179	158	192	0.83
4	5	0.024	48	4.9	1.8	9	28	193	210	183	218	0.82
5	5	4.3e-05	0.085	13.7	1.1	14	35	224	242	214	245	0.72

Coding Sequence: atgcAAGAAATTGATTGTTTTCGGTCTCTAATTTTTGAGAAAGCTCAAGAAGTACCTCACCAATTATTGCCTGTGAAATCCAAAGAACGTTATGAAAAAGGCCTTCCTGAGTTTTCCTGGATGTGGTGGAAGTGCATTTCCGTAGTGGCCATGTCTCAGCAGTCCAAAGAAACGTACCATTTCCGCCGGCAGTCAGGTCTGCAAGAATACACATCATCAATTGGAGACAATTCAGTTTTGTACAAGAAAGAAGACGATATAACTTTGTGGTCCTGCTCATGTGATATATGTCATGAAATTTTCTATTCCAGCGAACTTTTAGATGCTCACATGATGACCACTCACGGTCTTGATAATTCTATAACCCAGGCAAAAATTGACGAATTAAATCCAGATTTCAAATGCAAATATTGTACAAAAGCGTTTACCCGAAGACGGAATCTCACGCAACACATCAAGGAAATCCATGAACACGATAAAATACCCACAGCAGAGAAACCGTTAAAATGTTCCTACTGCCAACAAATCTTCACTCAAAATTGCTTCCTTTTGAGGCACGAACGGGAAATTCATCAAAGAGTACCTTCCGAGAAAGTTACGTGCAAAGAATGCGGTAAATGTTTGCGTACCCAAACCGGTCTGAACGCTCACTATCAAGTCCACAGCGGAAAGAAACCGTTTAAGTGCAATTATTGTCAGAAAATTTTCGCGAGAAAAGGCAACCTGACACAGCACGAGGTAGTGCACACTAGGGCGAACCCTTag
Protein Sequence: MQEIDCFRSLIFEKAQEVPHQLLPVKSKERYEKGLPEFSWMWWKCISVVAMSQQSKETYHFRRQSGLQEYTSSIGDNSVLYKKEDDITLWSCSCDICHEIFYSSELLDAHMMTTHGLDNSITQAKIDELNPDFKCKYCTKAFTRRRNLTQHIKEIHEHDKIPTAEKPLKCSYCQQIFTQNCFLLRHEREIHQRVPSEKVTCKECGKCLRTQTGLNAHYQVHSGKKPFKCNYCQKIFARKGNLTQHEVVHTRANP

Sequence clustering based on sequence similarity using MMseqs2