Pjap023870.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01058993.1:11972-13856[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-06 0.00069 20.1 0.0 17 42 1 27 1 29 0.91 2 2 0.22 37 4.9 0.0 9 25 21 37 21 37 0.90
Sequence Information
- Coding Sequence
- ATGGGATATAAAAAAGCCTCCCAAAGTTTTAATATTCCTCAGTCCACTTTAGAAGACCGCATAAAAAAAGTTAGAAATGGTACTACCTCTGTTGAAGAAGCTAGTAAGAAAGGTCTGGGTCGGTATAAGCCCGTGTTTAGTGCTGCACAAGAGGATGAACTTGTTTcagatattttgcaaatagaaAGTAGATTATTCGGTTTCAATTTATCTGACTTACAAATTCTTGCTTACGAACTAGCCATACGGAATAACATCACTCATAATTTTAACAACGACAAGAAAATGGTTGTTTCTGCAAAAGAGGTCTTCCCAGTACGTAAGGCATTCAGGAAGCCATCCAACGATAACAGGAAAAGGGGAAAGGCTGCTCTAATAACATCCTCTCCTTATAAATCTGAGTtgcaaaaaaatttgaaaaaatctcctgtcataaaaagattaaaacaaaatgaaaagggcaaaaatgaaaaaaATTCTGATACTTCAGATGAGGCAGACGATAATGACGATGCGTGTCTTTATTGTAATGAACTATTTTCCAACTCCAAGTCGGAGCAAGGCTGGATAAAATGTGCGTCCTGCAACAAATGGGCCCATGAAGCTTGTAGTGCTTATGATGATGCAGATGAAGTAtttatttgcgacttttgctcataa
- Protein Sequence
- MGYKKASQSFNIPQSTLEDRIKKVRNGTTSVEEASKKGLGRYKPVFSAAQEDELVSDILQIESRLFGFNLSDLQILAYELAIRNNITHNFNNDKKMVVSAKEVFPVRKAFRKPSNDNRKRGKAALITSSPYKSELQKNLKKSPVIKRLKQNEKGKNEKNSDTSDEADDNDDACLYCNELFSNSKSEQGWIKCASCNKWAHEACSAYDDADEVFICDFCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -