Pjap022954.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01037324.1:1782-2412[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-07 2.8e-05 24.5 0.0 2 37 19 55 18 61 0.89 2 2 9.9 1.7e+03 -0.4 0.0 3 13 107 117 107 121 0.85
Sequence Information
- Coding Sequence
- ATGCCCTACAACTGCAAACGTCTTCCTAGGAGCCGAAAATATGCTGACTACAGCAACGAACATCTTCAAACTTGTATAGAAACCATCAGATCTGGTGAAATGACACAAAGGCAGGCTGCTGAACATTTCCAAATATTCCGAAACACTATTAAAAACAAGTTCAAGCCTGCACTTTCAAGTTCCCCAGGCCACCCTAAAGTATTTTTGCATGAAGAAGAATTAGCTTTTGCAGTCCCACAGACGTTAACAGTCAAGTTTTCGTCTAACATCAAACGAAATCGAACTCAgattgatgaaaaaatattaacagaGTACATTGAAAATCTGAAAGAGGCGGTCAATGAAGTATCGCcagataaaatttataacgaCGACGAAATTTGTATGTCAGTTGACCCTGGAAAGAAAAAA
- Protein Sequence
- MPYNCKRLPRSRKYADYSNEHLQTCIETIRSGEMTQRQAAEHFQIFRNTIKNKFKPALSSSPGHPKVFLHEEELAFAVPQTLTVKFSSNIKRNRTQIDEKILTEYIENLKEAVNEVSPDKIYNDDEICMSVDPGKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -