Pjap011683.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01058988.1:1665-8013[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-09 1.4e-06 28.6 0.0 1 36 33 68 33 75 0.93
Sequence Information
- Coding Sequence
- ATGGATATTACGATAATCCCAATCAGAGCAGACAAAAACTCATTTAACTACTTTCTACCTCTTCCTGGAAAATTTGAAGCTCAGCTTGGAAAGTGGACAGAGGATCAGCTAACCAGAGCAATCAATGCTGTTCTTAATGATACGATGGCTGTGAGAAAAGCTGCGGTAACGAATGGTATTCCCAGAAGAATGTTGAGAAACCATCTATTGTCCGGAAGTTTTAAGAAGATAACAGCTGATGTAGGAATGCCTATTACTCCAAAATATGTGAAGCGAACTGTTTACACTTTTTGTgatatgaacaaaataaaaaatccatGTAGTAACAAATTAGGAACTGCAGGAAGAAAATGGTTACAATTATTTATGCGAAGGTATCCAGATATCAGCAAAAGAAAGTCTCAAAATTTAAACCCAGCAAGAGCCCAAAAAAGGCATGAAAAAGGCAATCGATTGTGTTTGCATAAAGTTCCTGTTGCCTTAGCCCGAAAAGGATCTAAACCAGTACACAACATAGCCTCTGAGCATGGGCAAAATGTTACAGTTCTGTCTTGTGATAATGCTCTGCGGCAAGTAATTCCAccagttattttatttaaaggaaAAGGTGGCGACCTGAGTGGTGTGAAGACTTACCGTCTGGCAGTCAAATATTTATGA
- Protein Sequence
- MDITIIPIRADKNSFNYFLPLPGKFEAQLGKWTEDQLTRAINAVLNDTMAVRKAAVTNGIPRRMLRNHLLSGSFKKITADVGMPITPKYVKRTVYTFCDMNKIKNPCSNKLGTAGRKWLQLFMRRYPDISKRKSQNLNPARAQKRHEKGNRLCLHKVPVALARKGSKPVHNIASEHGQNVTVLSCDNALRQVIPPVILFKGKGGDLSGVKTYRLAVKYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -