Pjap002944.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- SMLS01059948.1:324-926[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-10 1.6e-07 31.7 0.0 5 40 20 56 18 60 0.89 2 2 9.4 1.6e+03 -0.3 0.0 15 22 59 66 57 68 0.80
Sequence Information
- Coding Sequence
- atgcccACGACTtacaaaagtaaaaatgaggaaaGAGCTAAATGGTGTGCCGGTTCTCTAAGAAATGCAATTGAATGTGTACAAAATCGTACAATGGGTGTAAACGAAGCCCCCAGACAATTTGGAATTCCAAAAACAACACTAAAAGATAGGATTAAGAATGGGACAAAATCCGAAGGAATTTCTATTAATCGAGCGACTGAAATGAACCGTGTGACTGTGGAACACTGCTTTACCCTTTTAGAAAAAGTTCTCACTGATAACCAACTTCATAACAAACCTTCAAATGTATTTAATATGGACGAAAGCGGATTGCAATTAAACAATAGACCAACCCAAGTGCTAGCCGAAAaaggttaa
- Protein Sequence
- MPTTYKSKNEERAKWCAGSLRNAIECVQNRTMGVNEAPRQFGIPKTTLKDRIKNGTKSEGISINRATEMNRVTVEHCFTLLEKVLTDNQLHNKPSNVFNMDESGLQLNNRPTQVLAEKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -