Pjap020089.1
Basic Information
- Insect
- Popillia japonica
- Gene Symbol
- -
- Assembly
- GCA_004785975.1
- Location
- ML219050.1:21132-27557[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-06 0.00023 21.6 0.1 17 43 1 27 1 29 0.95 2 2 8.9e-12 1.5e-09 38.2 0.0 4 40 79 115 79 119 0.93
Sequence Information
- Coding Sequence
- ATGTCACAAAGAGGAGCAGCTCGATATTTCAACGTTCCAAAAAGTGTTATTTCCAGTCGTATTTGTGGAAAGTATAGCGTAAATCAACTAGGAACTGGCAGAGCACCTATATTTTCGAAAGAAATGGAAGAGGAAATATTACAGTACATCCGTAAAGAACTTGCAAGTGGTCAGAAACATAGTAAGGACGATATGTTGCGTCTTATAGGAAAGATTAAGAAGTACTCCTTATACGATCTTCAGGAAGCTGTGAATTATATAAAGTCAGGGAAGATGTCACAGGCAGGCGCAGCTCGCCACTTTAATATACCTCGGAGTGTAATTCGATCTAGATTAGACGGTTCAGTCGACATTAATAAGTTAGGCGGAGGGAGGTCTAATTATTTGCCACTTGATATAGAAAATCAAATATATGAATACATTCGAAATCAGAAAGTCGCTGGGCTACAACACACGCAAAAAGAGCAATTGAAAGTTATAGGAGACTTTATTTGTCAGCAGAACTGGAAAACTCCTTTTAAGAATAATATCCCCGGCTTGGACTGGTATCGAGCTTTCATAAGACGCCATCCTAAGCTCTAA
- Protein Sequence
- MSQRGAARYFNVPKSVISSRICGKYSVNQLGTGRAPIFSKEMEEEILQYIRKELASGQKHSKDDMLRLIGKIKKYSLYDLQEAVNYIKSGKMSQAGAARHFNIPRSVIRSRLDGSVDINKLGGGRSNYLPLDIENQIYEYIRNQKVAGLQHTQKEQLKVIGDFICQQNWKTPFKNNIPGLDWYRAFIRRHPKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -