Prid027274.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596270.1:2262774-2299636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 9 6.9e+02 1.9 0.1 2 23 482 503 481 503 0.87 2 26 0.023 1.8 10.0 0.1 1 23 513 536 513 536 0.95 3 26 0.069 5.3 8.5 3.8 2 23 725 746 724 746 0.95 4 26 0.00012 0.0091 17.2 0.3 2 23 789 812 788 812 0.97 5 26 0.13 10 7.6 0.2 1 23 818 840 818 840 0.93 6 26 0.012 0.93 10.9 5.3 1 23 846 868 846 869 0.96 7 26 5.5 4.3e+02 2.5 0.0 2 14 879 891 878 894 0.88 8 26 5.5 4.3e+02 2.5 0.0 2 14 927 939 926 942 0.88 9 26 5.5 4.3e+02 2.5 0.0 2 14 975 987 974 990 0.88 10 26 5.5 4.3e+02 2.5 0.0 2 14 1023 1035 1022 1038 0.88 11 26 5.5 4.3e+02 2.5 0.0 2 14 1071 1083 1070 1086 0.88 12 26 5.5 4.3e+02 2.5 0.0 2 14 1119 1131 1118 1134 0.88 13 26 5.5 4.3e+02 2.5 0.0 2 14 1167 1179 1166 1182 0.88 14 26 5.5 4.3e+02 2.5 0.0 2 14 1215 1227 1214 1230 0.88 15 26 5.5 4.3e+02 2.5 0.0 2 14 1263 1275 1262 1278 0.88 16 26 5.5 4.3e+02 2.5 0.0 2 14 1311 1323 1310 1326 0.88 17 26 0.58 45 5.6 0.0 2 19 1359 1376 1358 1379 0.90 18 26 2.3 1.7e+02 3.8 0.2 1 23 1458 1480 1458 1480 0.96 19 26 4 3.1e+02 3.0 7.2 1 23 1487 1509 1487 1509 0.95 20 26 0.0027 0.21 13.0 1.8 1 23 1561 1584 1561 1584 0.95 21 26 0.0018 0.14 13.5 0.8 1 23 1591 1614 1591 1614 0.98 22 26 0.0074 0.57 11.6 0.2 2 23 1636 1658 1635 1658 0.96 23 26 0.0009 0.069 14.5 2.2 2 23 1680 1702 1679 1702 0.95 24 26 0.00057 0.044 15.1 0.8 1 23 1746 1768 1746 1768 0.98 25 26 0.00012 0.0095 17.2 0.1 1 23 1774 1796 1774 1796 0.98 26 26 0.00076 0.058 14.7 0.6 2 23 1803 1825 1802 1825 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGCCACAACCTCCGCTGATTCTGTGCATGGAGAATATGTCCGGGGAAGAGGTGGCGCTGCCGATTGAGCCGCATGATGATTTCCAGACGTTCCTAGATAAGGCTAAATCACTTTTAGGGTTTGACGTTGACATAAATTCCATTACAAGAAACCAATCAGTTTCTCTAAACGATAATATATACCAATTCCTCATAACCGCTGACAACACAGCCGATGGCGCATTGGCCACACCAAGCTTTGAACAAATGTTGGAAACAAACGATGGCACCAATGACCTAGTGTATATTTTAGATGATGGCACGCAAATACGAGCTTCACAAATACATTTTGATAATGAAGATCCTCCGGTAGACTTGACGGCCGAGAAAATACCGTTTGTTAAATATACAAATGATTGTGTCGATGATTTAGATATAGAAAACCTTAAtattgaagaaactaaaaactataatatcattgaaagtCCAGTTTCTAGATGGTCCAGCAAAAATTCCAGTCCAAAATGCAGTTTCGTCAACAGTCTACCTTTCAAACTAGTTTGCAATAATTCATCAGCTTTCGAAGCCCAATTTACGAAATTTCTAGAAGCAAGCACAGCTAAAACTTACGCGACTTTGAACCCTGTCGTTAATAGAAATAAGTCTCCTCGGAGTTTGATTAAGGATAACTTTAAAAAGTTTGATGATAGCTACCAGAGAGACGATTTGAGTTACACGCGTGAAGAGGTTTTGAATATGTTCAAAGATTCTCCTGTAGCATCATTACCGTATGAAAACCATGAGAGAAGGCATGTAAGGAAAACTGATCCGTCTCGGCTAGTACATAAGAACTGGAATGTAAAGCCGACTTACGTTGATATCGGCGGGGTATTAATTGGTGGAAGCGAGAGccaaatatgttttatttgcgGGAAACACGTAGATAAAAACGCAGATAAGTTGTACCTATTTGACAATGAAGACCAGAAGATACATAGATGTTCACCACAGAAGAAAATGTCTACTCAACTGAAAATTATTTGCGAAGGATGTCTTAACGAAAACTTTATGCCTTGTAGATTGAAAAGTGCGAACCAATTTCTAAACCCCGACGAATATTTGGTAATACGAAACAATCAGCAGTACATATTCCAGAAGACGAAAAACTTTAAATATTGTGGAGCAAAAATCATAGACAAAGAATTAGATAAAGATGAATTGGTCAAAGTTGAAATAGGGTCTGATGGTGAGATAGTAACTAAGCCAATAGACAATGACTCTAGATCTGAAGAcattgtaataataaaagatGAAATGAGGGATAGTTCTAGTGATGTAGAGATAATTGAGCCGGAATCTGAGATAGATAAAATTGTCGATAACTTGGAGGAAGCTGATGAGGACGTTAAGCGATTCTTGGGGAAGTATTCGTGTGATGCTGAAGATTTGAAGGAATTGAAGTGCAGATTCTgcgaaaaaatatttgaagctCTACCAGATGTGATAGAACACGGTGAAACACATAAGCACAGCTTAGAGGACGGCGAAGTGTTCCCATGTCCACTATGTAATTATGGTTACGCCAACTTTAAATGGCTTAAGGGACATCTGAAAGCAGCTCATGATAAACCTGacaagaaagaagaagaagggAAAGAGGAATCTAAAGATGCCGTCAAAATAGaTACAGAACAAGCTCCAGTGGAATCATCGCCCATAGCAAGGCGTACACGAAGCTCCATCAAAAAGTCTGAGGGTGATAAAATTGAAACTCCCgagaagaaagaagaagatGAGAAAAAGGCAGATTCCAATGCTGAAACGACTGAACGCATAATAAAAACGGAGGTGAAACAAGAATGCCTGGATTCCAGCGACGACGAGATATGGATCGTGCAGACCGCTGATGATGAAGCTTCCAGGCAGCTGCAGATATTGTTTGATGCTGCGAAGGGTAAAGATAAAGAAAATGACGACTCAAAGAAGACGCATAAATGTATAAATTGCAGTCAAGTCATAGAATCTACAGAAATAACCTCCGCACACAAATGTATAAAACGACGCGGTAGAAAGCGGAAGACAGCGGGGAAAGACGACAATCTATTGTGCATACCTACAAGGGAAGACTTCTATAAGAGAGGTCGCAAGAAAAAGAACAAGGAAGCAAGTTCAGATCCACAAATTGTGACTTGTCACAACTGCAATGAGTCGTTCACGTCCAAAGTTCGACTCAAGTTTCACATGCAATTTCACGAGTCATCAAACATGCTATCATCTGACGGGCAGTACTCTTGCTACGACTGTGAGAACGCGACTTTTAACACGGAAACGGAATTGTTCGACCACGTGCACTTCCAACACGGCAAGCAGAAGAGGTGGCAGTGTCCCGTTGACGGGTGTGGGAAGACTTTCTATTTGAGGGCAACACTTACAAAACACAGTCGTACGCACACAGACACCCGTCGGTATGTGTGCGTGACTTGCGGCAAGCGGTTCCTCGACAAGCAGACACTTGATGAGCATGGTGTCACTCATCTTCAGATAAAGCCGTTTCAATGCCACATCTGCCTGAAGCAGCTGACCCGGCGGTCACGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACACTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGTAGGTCTTGTTGTACTGAAGCAGCTGACCCGGCGGTCTCGTCTCCGGATGCACCTGCGGGCTCATCACGAGGAGTTGTCTCCCACATTAGTGGTGGTGTGCGCCGTCTGTTCACGCGCCTTCAGGGACCAGACGGACGCACAGGACCACGCTACGAAATCTACGGAATGTATAGAAGCTTTCGCTAGCGAGCTGAAGGAAGAAACTGAAGAGGTGACGGTACAGCTGTCGCCCACCAGTGGGCTTGTCAGACATACCGTGCAGATTGTCGAATCTCCAAAGCTGTCGAAGCCCATCCAGCGCGAGGTGTCGAGTGGCCTCGGAGCTGATCTGATCTctcaaataccagatgagtgcAGGACCATCATACGAGTTGTCGAGATTGAGAAGGCGTTCCGCTGCGAGTTCTGTGAGGATGTTTTCTACTTGGAGGAGGGATTGAACAGTCATCGTGTGATACACAAGGGTGTGAAAAATCCATTTACATGCCACATATGTAAAGTAAGCTTCGCTACATACTCTAGATGTACAACCCACAAGACTACCCACGGGTTCTACAAGCGGCCCCTGGCGGAGGCCAAGCGGTCTGCGGCGGCCGACGCGATAGGCCCATCGGCCTCGCACCCTGCACTCACGCACACACACCCACACGCAGACAACACACCTATACTGGGCTATGGAGACTTTCCTGTTGTTAAGCATTTCTTGTGCGAGGACTGCGGCCGCTCGTACCTCCACTGGACATATCTGCAAGTACATCGTCGTATGAAACACGCGAATGAGAACTTTGTGTACAAATGCAATCAGTGTGATCTCACTTTTCCTAACAGCTGGAGTGTGGCGTACCATAGGAAGAAATTACACGCAAAAACTGGTCAGGACATCCCAAATCATACCACTAAAATGGTTAGAGAAGACTATAGAATTCCCTGCAGAGATTGCGACGAGGTGCTGCCAAACAAAACTGCACTCTATAAACACAGGAAGAAGGAACACAGTGATATGTCACTGcgttttaatagtaaaccaaATGAGACTACCTCGCGTACTACTACAGTCAGCTGCGGTCACTGCGGACTGAGCTTCCCAAACGCGCACGATTTGCACACTCATCTCAAGCTAGTGCACATGCACACGACGCAACCGTGCGCGGTGTGCGCGGCGCACGCGCAGTCTCGCGCGCTCGCTACAGCAGGCGCGGGCACTAGTGCGGCTACTAGTGCGGGTACCAGTGCGGGTGCGGGTACAGTACGCACGCACTCGTGCCCGGTGTGCGCGCGGTCGTTCCGCACGGCGTCGATGCGCGCCGACCACCTGCGCACGCACACCGGCGAGCGGCCCTACCCCTGCGACGTCTGTGGACTCGCCTTCAGACGGTCGACCGCGATGCGTAACCACCGTTTAATTCACACGGGTGTGCGAGCATGGCCGTGTGCGCGCTGCCCCAAGCGGTTCCGCATCAGATCTGATCTGCGCACACATCTTAGACTCAAGCATCCCGCGCATTTAGCGctcattgagGTGGAAGGCTTAAACCCTACAACGGAAGAGGTGATGAAATACCTCCACTTGAACAACATACCCCAGGACAAGGTTATAGAAATATCCAGAATATCATTCTCGAAGGGCACGTCAAGTATTATACCAAACAGTGCTCGCGCGTTATCGATGTTGAGCAATGTAACACGCACGCAAATTACCTTCAACCAGCCACCGCCGCTTCAAAATGATGAATTCCAGCCGGTGCGTCGCGGTAGAGGCATAGCGAAGAACCCGCGAAGACCCAAGATACTACAACGTAGGGGTGATGAAATACCCCAACCGGAGCCGAATAATTATCCTATATCTGTCAGTGTTACTGGCGAGGAATTATCAGAAATTAATGTGCAACTGATGCTAAGAGACAGGGTGCTCGTCAACGGAAACCAAATGGTACAACTGCAATTAGATGACTCTATGCTAATGGAGTAA
- Protein Sequence
- MEEPQPPLILCMENMSGEEVALPIEPHDDFQTFLDKAKSLLGFDVDINSITRNQSVSLNDNIYQFLITADNTADGALATPSFEQMLETNDGTNDLVYILDDGTQIRASQIHFDNEDPPVDLTAEKIPFVKYTNDCVDDLDIENLNIEETKNYNIIESPVSRWSSKNSSPKCSFVNSLPFKLVCNNSSAFEAQFTKFLEASTAKTYATLNPVVNRNKSPRSLIKDNFKKFDDSYQRDDLSYTREEVLNMFKDSPVASLPYENHERRHVRKTDPSRLVHKNWNVKPTYVDIGGVLIGGSESQICFICGKHVDKNADKLYLFDNEDQKIHRCSPQKKMSTQLKIICEGCLNENFMPCRLKSANQFLNPDEYLVIRNNQQYIFQKTKNFKYCGAKIIDKELDKDELVKVEIGSDGEIVTKPIDNDSRSEDIVIIKDEMRDSSSDVEIIEPESEIDKIVDNLEEADEDVKRFLGKYSCDAEDLKELKCRFCEKIFEALPDVIEHGETHKHSLEDGEVFPCPLCNYGYANFKWLKGHLKAAHDKPDKKEEEGKEESKDAVKIDTEQAPVESSPIARRTRSSIKKSEGDKIETPEKKEEDEKKADSNAETTERIIKTEVKQECLDSSDDEIWIVQTADDEASRQLQILFDAAKGKDKENDDSKKTHKCINCSQVIESTEITSAHKCIKRRGRKRKTAGKDDNLLCIPTREDFYKRGRKKKNKEASSDPQIVTCHNCNESFTSKVRLKFHMQFHESSNMLSSDGQYSCYDCENATFNTETELFDHVHFQHGKQKRWQCPVDGCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQVGLVVLKQLTRRSRLRMHLRAHHEELSPTLVVVCAVCSRAFRDQTDAQDHATKSTECIEAFASELKEETEEVTVQLSPTSGLVRHTVQIVESPKLSKPIQREVSSGLGADLISQIPDECRTIIRVVEIEKAFRCEFCEDVFYLEEGLNSHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLAEAKRSAAADAIGPSASHPALTHTHPHADNTPILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFVYKCNQCDLTFPNSWSVAYHRKKLHAKTGQDIPNHTTKMVREDYRIPCRDCDEVLPNKTALYKHRKKEHSDMSLRFNSKPNETTSRTTTVSCGHCGLSFPNAHDLHTHLKLVHMHTTQPCAVCAAHAQSRALATAGAGTSAATSAGTSAGAGTVRTHSCPVCARSFRTASMRADHLRTHTGERPYPCDVCGLAFRRSTAMRNHRLIHTGVRAWPCARCPKRFRIRSDLRTHLRLKHPAHLALIEVEGLNPTTEEVMKYLHLNNIPQDKVIEISRISFSKGTSSIIPNSARALSMLSNVTRTQITFNQPPPLQNDEFQPVRRGRGIAKNPRRPKILQRRGDEIPQPEPNNYPISVSVTGEELSEINVQLMLRDRVLVNGNQMVQLQLDDSMLME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -