Prid008020.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596247.1:19183054-19189922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.6 4.3e+02 2.5 1.1 3 23 451 473 449 473 0.91 2 13 1.7 1.3e+02 4.2 2.2 2 19 495 512 494 518 0.92 3 13 0.0068 0.52 11.7 4.7 1 23 532 555 532 555 0.96 4 13 5.1 4e+02 2.6 0.6 6 23 565 584 561 584 0.91 5 13 8 6.2e+02 2.0 0.8 2 23 605 629 604 629 0.82 6 13 0.052 4 8.9 0.1 2 21 635 654 634 655 0.94 7 13 1.4e-05 0.0011 20.1 0.5 1 23 714 735 714 735 0.97 8 13 1.4e-05 0.0011 20.1 0.3 1 23 741 764 741 764 0.96 9 13 0.00029 0.022 16.0 3.1 2 22 791 811 790 814 0.88 10 13 0.029 2.2 9.7 0.7 2 23 820 843 820 843 0.95 11 13 1.4 1.1e+02 4.4 5.2 1 20 850 869 850 872 0.93 12 13 0.00051 0.039 15.2 2.5 1 21 878 898 878 903 0.92 13 13 0.057 4.4 8.8 2.1 1 23 909 932 909 932 0.96
Sequence Information
- Coding Sequence
- ATGCTGTCGCCGCGAGACGAGGACGACGATGACACCCATCTGTGCATCAAATGCAACGCCACCATCGATGGCCTGGACAACTACGTCAAGCATAGAAAGCAAAGATGTGGGAAAATTAATAAGTCTGAACCGCTCAAACCTGAACTTCCAACTATTGAGCCTTTGGAACAAACCTACAGTCTTGGAGCTGATGTCTTTTTCCAATCTTTGGAATTGCAAAGCAGCGTTAAGAAAACTTGTTTGTCGAGATTGACACCTCCAATTCCTATCTCAAAAGCTAGTTTAGAGAGAAAAAGCACTATGGTCGCATCAACATCGAGAGATATACCAAGAATGAGTCCATTAGAAAATAAATTGAGAGGAGTCTGGATTGGAGGACATAGCTTAAAGATCGGGAGTAATGTAGACAATCAGACTAAATTAATCAATGCTGTGGCCAGTATCAGTGGTgctgtcaaaaaagaaataCAATCGTCATATAGCATTAATTACAACGATTATAAAGGTGACGAAGAGTCTGATGTATCTGAAGATTCTGAAGAAGATGATGAAGAGGAGCATGTGGGTGACGGGAAATGGAAACCTCCACCAAACTATACAGGTGGAAAATGGCGGCCAGCGTCACCTGAACATGAGGATTGGGATATACGAGACGAGCAGGAACATACGGAAGATGCAAACGACCGCGACGAAGATTATGATGCGCCACCTCCGAGTCACACGAAAGGAAAGTGGGTACCAGGTGCCAATGAAAAAACTCAAATAATGCAACCAACTTTACAGTCGAAAGGATCCGTGCAGTACTGGTGCGGTCCATGCAATAGAAGGCTGGGATCCAGAGCCATATACGATAAGCATTTGAGATCCAGCTTACATCTAAAAAAAGTTCTTCCAGAGCATGAATTAGAATTCTCAGGACATTTGGAACCGATCAAAAATATTGTTGACAAACGTAGTACACGTCCATCAAGGTTTTTAAACGATAGCATTTACTCTAAAGTACAGAGAAAAAGGCAGAAGACTGGAGTTTATAAATTGAATATTAAAATAGAAAAGAAGAAACGAAAGAGGAAGCCTAATTTTGTTCACTGTGCTGGCTGCAAGTCTCGTGTGAGACAACATTTGATGGGAAAGCATCTCATATCTCATTATCACTTTAGGAAGGCTACGGACACTAGCAGCACTATGTATCGACAACTGGTTCTTGAAAACATTGATGCTATCGTCCACCAATCCCCTTTCCAATGCAGTCcatgtaaattctacactaattggctctcaaatttcatgcagcatTGGTCCTCTGAGGAGCATGAACAGAAAGTGGCTGCAACTGAAGGAAGATATTGGTGCTCTTTCTGCAAGTTTGAATGCGTAACTTCCCAAGGAATGGTAGATCACATGAATAGTTCAGACCACAGTGAAGTGGTCGCTGTGATTAACAGATCAATGCCAATTATAATCAGAAAGAAGTCTATACTCAAATGTGATACGTGTTCTCAAGAGTTTCGATacaatattgaaattaaaaagcACTGTCTGAAAACTGGACATAACTTAGCAAACACAGCCACTGATAACTACCAAGAAATCCACAATTGTCAGCATTGCACAGCTAGGTTTAAATCTTCACTGACATTAGCTGCTCATATGAAACGTAGACATAAACAAAGAGCATACCTTTGCATCGCGTGCGCACGAGCCTTCAACACTTCGGAGGAAGCCAAACACCATCGGCAAACATCGGAACACAGGATCAAGCGAAAAGAGAAGATGAGAGAGCAAGGGAAGTTTATAAAAGATCTGAGTAAGAAATGCCCTTATTGCACGGATGTACTCATTTTGAAGAATATTTTAGAATTGAAGGAGCATATCCGTAGAATTCATCCAGACATCAGGAAGAAATGTCCGAAATGTGGCATGCAATTCATCCTATCACAAGAAGTATCAAGACACGTCAGGGACAACGCGTGTCAGTTCCAAAGCACCAGCCAAATGAATTCTTCGATATTCTGGAACTGCAGCCAATGCCTATTCACCACCGACTCCCAATCAGAGTGCTTCTTCCATGAAGTCTTGCATACTGCTCCAAAGAAAGAGTTCCGCAAAGTCGGGGATGAAGAAAAAGTTATTCTGAAGTACGCCTGCCCTCTTTGCCCCAAAAGTTTCAGGAAGGCTTCGTTACGACAGCATTTAAGGCAGCACACTTTCGAACGGCCGTTTATCTGCACGACTTGTGGCGCTAACTTTACACGACAGTCCAGTCTCGCCAACCATGTTAAGAGTGAGCATGGAACCGAAGTGATAACTGACAAGATACCGAAGCTATCAACCATTATCGAGAGCATTCAGGAATTGGACGTCGAATGGGTGTGCGGACAATGTAAGAAAAGATTTGCTAACAAGAGCCAGCTGACCCGTCATTCGAACAGCTGCAATCATGTCCCTGATGAACGTCAGTGTCCACATGATCAGTGCTCATTTGTGGCTGCCACTGCCAGTCAACTCAACAaACACAGGAGAGCTCATGGGGACCGCGTCAAACATCATTCATGTCCTTTATGTCCCTTCAAGAGTGACCAGGCAAGCCATATGAAGAGACACAAGCTATGCCATGAAGGAGTAAAGCCCTATGCATGTCCACATTGTGATTTCACTTGTAGAAGTTTGGAAAATCTTCGTAAGCACGTTCTCCGCAGCGGCAGACATCAAGGTGTTCATCTTTATCAGTGTCACCGTTGCGACTTCAAAACCAACATGGCGACGGAGTTTCGCGCTCATTTAACTAGTGCGCACGCGTCTGATTACGACGCTAAATCTGCGTCGCAAGCCTCAAAAACACATCTTATGAAAAactga
- Protein Sequence
- MLSPRDEDDDDTHLCIKCNATIDGLDNYVKHRKQRCGKINKSEPLKPELPTIEPLEQTYSLGADVFFQSLELQSSVKKTCLSRLTPPIPISKASLERKSTMVASTSRDIPRMSPLENKLRGVWIGGHSLKIGSNVDNQTKLINAVASISGAVKKEIQSSYSINYNDYKGDEESDVSEDSEEDDEEEHVGDGKWKPPPNYTGGKWRPASPEHEDWDIRDEQEHTEDANDRDEDYDAPPPSHTKGKWVPGANEKTQIMQPTLQSKGSVQYWCGPCNRRLGSRAIYDKHLRSSLHLKKVLPEHELEFSGHLEPIKNIVDKRSTRPSRFLNDSIYSKVQRKRQKTGVYKLNIKIEKKKRKRKPNFVHCAGCKSRVRQHLMGKHLISHYHFRKATDTSSTMYRQLVLENIDAIVHQSPFQCSPCKFYTNWLSNFMQHWSSEEHEQKVAATEGRYWCSFCKFECVTSQGMVDHMNSSDHSEVVAVINRSMPIIIRKKSILKCDTCSQEFRYNIEIKKHCLKTGHNLANTATDNYQEIHNCQHCTARFKSSLTLAAHMKRRHKQRAYLCIACARAFNTSEEAKHHRQTSEHRIKRKEKMREQGKFIKDLSKKCPYCTDVLILKNILELKEHIRRIHPDIRKKCPKCGMQFILSQEVSRHVRDNACQFQSTSQMNSSIFWNCSQCLFTTDSQSECFFHEVLHTAPKKEFRKVGDEEKVILKYACPLCPKSFRKASLRQHLRQHTFERPFICTTCGANFTRQSSLANHVKSEHGTEVITDKIPKLSTIIESIQELDVEWVCGQCKKRFANKSQLTRHSNSCNHVPDERQCPHDQCSFVAATASQLNKHRRAHGDRVKHHSCPLCPFKSDQASHMKRHKLCHEGVKPYACPHCDFTCRSLENLRKHVLRSGRHQGVHLYQCHRCDFKTNMATEFRAHLTSAHASDYDAKSASQASKTHLMKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083820;
- 90% Identity
- iTF_01083820;
- 80% Identity
- -