Basic Information

Insect: Polyploca ridens
Gene Symbol: -
Assembly: GCA_951394255.1
Location: OX596272.1:4188519-4203529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2 3.3e+02 2.9 0.6 1 23 245 267 245 267 0.85

2 14 0.39 30 6.2 1.4 1 19 326 344 326 345 0.95

3 14 0.25 19 6.8 0.1 1 23 363 386 363 386 0.90

4 14 0.42 33 6.1 0.3 2 20 424 442 423 444 0.86

5 14 0.43 33 6.0 0.1 2 23 450 471 449 471 0.94

6 14 4.9 3.8e+02 2.7 0.7 1 8 713 720 713 731 0.90

7 14 1.3 97 4.6 1.8 3 23 750 770 748 770 0.91

8 14 0.0077 0.6 11.5 0.1 1 23 775 797 775 797 0.98

9 14 3.2 2.5e+02 3.3 5.6 3 23 894 914 893 914 0.95

10 14 0.003 0.23 12.8 1.3 2 23 930 951 929 951 0.97

11 14 9.5e-07 7.3e-05 23.8 3.5 1 23 957 979 957 979 0.98

12 14 0.0022 0.17 13.2 0.1 2 23 985 1006 984 1006 0.96

13 14 0.0013 0.1 13.9 5.8 2 23 1013 1034 1012 1035 0.94

14 14 0.0014 0.1 13.9 0.8 3 23 1074 1095 1073 1095 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2	3.3e+02	2.9	0.6	1	23	245	267	245	267	0.85
2	14	0.39	30	6.2	1.4	1	19	326	344	326	345	0.95
3	14	0.25	19	6.8	0.1	1	23	363	386	363	386	0.90
4	14	0.42	33	6.1	0.3	2	20	424	442	423	444	0.86
5	14	0.43	33	6.0	0.1	2	23	450	471	449	471	0.94
6	14	4.9	3.8e+02	2.7	0.7	1	8	713	720	713	731	0.90
7	14	1.3	97	4.6	1.8	3	23	750	770	748	770	0.91
8	14	0.0077	0.6	11.5	0.1	1	23	775	797	775	797	0.98
9	14	3.2	2.5e+02	3.3	5.6	3	23	894	914	893	914	0.95
10	14	0.003	0.23	12.8	1.3	2	23	930	951	929	951	0.97
11	14	9.5e-07	7.3e-05	23.8	3.5	1	23	957	979	957	979	0.98
12	14	0.0022	0.17	13.2	0.1	2	23	985	1006	984	1006	0.96
13	14	0.0013	0.1	13.9	5.8	2	23	1013	1034	1012	1035	0.94
14	14	0.0014	0.1	13.9	0.8	3	23	1074	1095	1073	1095	0.95

Sequence Information

Coding Sequence: ATGTCGCAGAATACTAGAAAACGATGTCGAAAATCTAAATTGGTGCCACACATTTATTATTTGGAAGACAGTAAAGACGAAAACGACGACGCGGCCACGAGCGAAAAGGCATTACCATCAAAATTACAGAAGATAAAACAAGAAATTGATAATGAAGAAAATAATTCAACTCCATTTCAAAATGATGTGGCAAATCCGTTACAAAATTACATGACATTTCCCATACAAAATTATATGCCATCTCCCATGCAGTTCTCTGTCAACGTGGAAGTTGAGGAATGTGATGAACTAGACTTGGATATTAAGGAAGAACTCACGCAGGAAGAGAATTTAGCTGATGTAActgaaaaatataatgatacTCAAAATTCTGTACCATCAATGTCAATATCAGATATCGATATCAGTAAAGAAGCTGATGAGTTATTAATAAAAGCAGAAAAGATTAATTTAGATCCAGATATATCTCAAAAATGCACAGAGTCATCAATACCTTTAGAATTACTTAGAGAGaagaagcaaaaatattttgtgttgTCTAAAGAAGACATCTTAAGTTATCAACCGGACCCACACAATATACCAGCCAAAATGTTATATATAGAAGTTAGGAACATCCTAGGACGGGCAATCAAAAGCAGTTTGGAGATAGACTGTCACGATACATTAATACAAACAGCATTATTAGAGAAGCAACTTACAGTCAGTAAGTACAAAGATAGCTTGTTTATGTACAAGTGTTATATTTGTACCAAAGCCTGGTGGACCTTGTATCCGTTCCGAGAACATATAAGACAACATCGTGAGGCAGATCTGATGGTAAGCACGGAATCAAATGATGGTCTGGAAACCAATATGATAGCATATACAGGAACGGCACCAGGGAACACAGATATCGAAATTGATTCTAATTGCTGGCACTGTGGAAAAATCTATGGTATTCATAAAAAGATTGAGGGCAGCAACAAAATCAGTTTTGATTGCTTTTATTGTACAGAAAAATTTGTATCATGCATTCAATTGGCAACTCACGAAGGATTTTGCTTCTGGCAGATGCATAAGACGCTAGCAGACGAAGCAGTGTGCTTCAACTGTCCGTACTGTTTAGTAATTGTATTCAGTAACTCTGAACTGCAAGATCATTTAGTTCAACGGCATTCTGTGAGGTCTGATGTACCAATGCCGGCTACATTTAAGTTCTGTCAGTATTGTAAAGGAAAATACTTTAAGTTCAATTTCCATACATGTCGGAAGCGATCAGATAATAAACCGTGCTTGCATTGCAATAGGATGTTTCCTACAAAGCAATTACGGGATGCACACTTATTGTTGGCTAAGATTAATGTCAAATGTCCTATATGTGGTATTGTTTTGGCTAAGGAATGCATGATGATGGGACATCTATTGGTGCACAGCAATGACTTCACGGTCTGTTCTAAATGTGTTTTGTGTACGGATATTTATGTGTTCTTGGACCCAGAGGCTGAGAGAGAACACAGGGTTTTGCACCATAAATTGAAGTTTGACCCTAGGAGGACCAGTTTTGAAATGGTGTTAATACCGAATAAATTGTTGGTAAATCCTTGTCCACCACTAAGAAGTAAACCAGATGTAATAATGATGTCCCCGAGCAGCATAGCACCGAAAAAGATAATACAAAGTTCTAACAACACAAATAAACTGAAATCTAAGGTAATGCTGGAAGACAAAACGGACGGGAACGACGAATCAGTGAAAGATTTAACAAAAGTAATCAAAATTGAAAGAATTGAATCTGAAACAGAAACGCCAGACTACGAGAGTATCATCCAAATTAATCAAATAGGATCAAAGACACTTATAAAAACGGAACAAAATGAAATAGAACCGGATAATTACAATATTCAAATATCTAATATAAAACAAGAGGTGGAGGATTTTGTGGATACCGAAAGTAATACGGCAGATTACGAGCAGTTGCTATCCAACATATTCAGAGTATCAGAAAACTTCTCAAACAAGAGTTACGAAGTTAAAACAGAACCACAAGACGAAAACACAGATGAAGACttattaaaaattgaaaatatcaATTTAGATTCCCTTGAACCGCAAGTGATACTCACATCTGGCTTCCGTAAACGTAAACGTAGAATATACAAATGCAATAAATGCGGCTACCAAAACTACCACAGAGAATATAGATTGCATTTAAATAATACATGTGAGCCTGTGAAAGAAATTGTGGAAAAGAATACAGATTATGGATGTACGAAATGCTATAAAAACTACTCTAGTATGAAAAGATATATACAGCATTTAACACAGCATGGATACAATTGCTTTACTTGTCCGGTATGCTTGGAGGTCTCTGAAAATCTGTCATTATTTAGTGCTCATATAAGGCAACATGTACGGAAGAGTTATGTTAAATTAGTGCTCATAAGTCAGTCGAAGAAGCAAACAAAAGTGTTACAGTGTAAAAAGTGTAAAGGGAAAGTGATGATGGAGAATTTTTTCGCACATTGGGAGTCGCATTTGGAACTTGTTCAAGTGACTCGCCAAGATGTAGTGGAGAAATGTGAGGAGGACACTCCAGTAGAAATCACTACGGCATTGGAACCTGAAACTATGAAGGAAGCCATCAAGCTGCTGGTAGACTCAGATCGACGTCACCAACAAAGGCAGCTACAGAAGGACTGCAACGTGTGTCACAGACATTTTGACAGGGTGAACGATTGCAAGAGACATATAATAGAACACCTACTGGTGGATGCATACGCTAATAAACCGCAGAACAAACTGCTGAAGTGCCAGATATGCTATGAGGGGTACCGGACGACTGACAAATACAAACAGCACATGAGAGACCACGGCTCGCTGCCAATCTTCAAATGTGAGCTGTGCAACAAGACATTCAGCGACTCCAGCAATTTTACAAAACACAAGAAAATTCACAATCTACGCGTACTCATATGTGATATATGCGGGAAGAAGTTTCAAGCGAAAATATCTATTGAGAAACATATGGAGATGCACCTAACAACCGAACCAATAAAATGCGACCTATGCCCAAAAGTGTTCCACACACAATCATCATACAAAAAACACTTCAAAAACCACCACGAAAAAAGAAAACCCAAATTTAGAtgtttaatttgtttaaaatgGTTTATGTGTCTAAAAGACAAGTGGGATCACATGTGGATTGCGCATAAGGAAAGAAAAAATGAGGCGGACTGTCCAATATGTAACAAGTCATTCAGGAAATTCCAAGACGTTAAATCGCATGTAAAGAATGAACACAAGATGTATGCCACAGTCTTAAATATGAAGCTGTTTAAACAAGCAAAGACACAAAGAAATAAATGA
Protein Sequence: MSQNTRKRCRKSKLVPHIYYLEDSKDENDDAATSEKALPSKLQKIKQEIDNEENNSTPFQNDVANPLQNYMTFPIQNYMPSPMQFSVNVEVEECDELDLDIKEELTQEENLADVTEKYNDTQNSVPSMSISDIDISKEADELLIKAEKINLDPDISQKCTESSIPLELLREKKQKYFVLSKEDILSYQPDPHNIPAKMLYIEVRNILGRAIKSSLEIDCHDTLIQTALLEKQLTVSKYKDSLFMYKCYICTKAWWTLYPFREHIRQHREADLMVSTESNDGLETNMIAYTGTAPGNTDIEIDSNCWHCGKIYGIHKKIEGSNKISFDCFYCTEKFVSCIQLATHEGFCFWQMHKTLADEAVCFNCPYCLVIVFSNSELQDHLVQRHSVRSDVPMPATFKFCQYCKGKYFKFNFHTCRKRSDNKPCLHCNRMFPTKQLRDAHLLLAKINVKCPICGIVLAKECMMMGHLLVHSNDFTVCSKCVLCTDIYVFLDPEAEREHRVLHHKLKFDPRRTSFEMVLIPNKLLVNPCPPLRSKPDVIMMSPSSIAPKKIIQSSNNTNKLKSKVMLEDKTDGNDESVKDLTKVIKIERIESETETPDYESIIQINQIGSKTLIKTEQNEIEPDNYNIQISNIKQEVEDFVDTESNTADYEQLLSNIFRVSENFSNKSYEVKTEPQDENTDEDLLKIENINLDSLEPQVILTSGFRKRKRRIYKCNKCGYQNYHREYRLHLNNTCEPVKEIVEKNTDYGCTKCYKNYSSMKRYIQHLTQHGYNCFTCPVCLEVSENLSLFSAHIRQHVRKSYVKLVLISQSKKQTKVLQCKKCKGKVMMENFFAHWESHLELVQVTRQDVVEKCEEDTPVEITTALEPETMKEAIKLLVDSDRRHQQRQLQKDCNVCHRHFDRVNDCKRHIIEHLLVDAYANKPQNKLLKCQICYEGYRTTDKYKQHMRDHGSLPIFKCELCNKTFSDSSNFTKHKKIHNLRVLICDICGKKFQAKISIEKHMEMHLTTEPIKCDLCPKVFHTQSSYKKHFKNHHEKRKPKFRCLICLKWFMCLKDKWDHMWIAHKERKNEADCPICNKSFRKFQDVKSHVKNEHKMYATVLNMKLFKQAKTQRNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00007585;
90% Identity: iTF_00007585;
80% Identity: -