Basic Information

Insect: Polyploca ridens
Gene Symbol: RREB1
Assembly: GCA_951394255.1
Location: OX596265.1:6232483-6247904[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.3 23 6.5 1.0 1 23 94 117 94 117 0.95

2 10 0.026 2 9.8 0.1 1 23 307 329 307 329 0.97

3 10 0.0014 0.11 13.8 0.4 1 23 338 360 338 360 0.99

4 10 0.00087 0.067 14.5 2.0 1 23 366 389 366 389 0.97

5 10 0.0035 0.27 12.6 1.6 1 23 734 757 734 757 0.96

6 10 0.00029 0.023 16.0 1.3 2 23 952 973 951 973 0.97

7 10 0.03 2.3 9.7 5.3 1 23 979 1002 979 1002 0.97

8 10 0.049 3.8 9.0 1.2 1 23 1035 1059 1035 1059 0.91

9 10 0.0022 0.17 13.3 0.2 2 23 1147 1168 1146 1168 0.96

10 10 0.033 2.6 9.5 5.3 1 23 1174 1196 1174 1196 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.3	23	6.5	1.0	1	23	94	117	94	117	0.95
2	10	0.026	2	9.8	0.1	1	23	307	329	307	329	0.97
3	10	0.0014	0.11	13.8	0.4	1	23	338	360	338	360	0.99
4	10	0.00087	0.067	14.5	2.0	1	23	366	389	366	389	0.97
5	10	0.0035	0.27	12.6	1.6	1	23	734	757	734	757	0.96
6	10	0.00029	0.023	16.0	1.3	2	23	952	973	951	973	0.97
7	10	0.03	2.3	9.7	5.3	1	23	979	1002	979	1002	0.97
8	10	0.049	3.8	9.0	1.2	1	23	1035	1059	1035	1059	0.91
9	10	0.0022	0.17	13.3	0.2	2	23	1147	1168	1146	1168	0.96
10	10	0.033	2.6	9.5	5.3	1	23	1174	1196	1174	1196	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCTGCCACCGCGCCCGCGCCTCCCGCGGCCGAGACACCTACCTCACaacAAATCAAAACAGAGGAGGCAATCAGTGCAGCTAAAATTGAAACTGAGGAGGATATGGACAAAATGAAGATTGATAGGCCAGAACCCAGAGCTACGAGAACGATCAGTATCGACAGCGACAATCGGTCTGATAGGAGTGAAGAAGATGACACTAGAAGGGCGCGAAAACGGGCGGCTTCAACATCTCCATCACCGATTCCATTGGACAAAAGAATCGCTCGATTCGAATGTCAGAAATGCAGACAGCGCTTCGATTCGGTCAACGCATTTGATGTCCACAGATTCACCGCCCACGGTGATGACAGTCGCACTGGCTTCGATGACTTAACATTCGCCGATTACTCAAGCAAAAAGGTTTCTGATATTGCACGAGGGGTCTACGAACGCAGTCATCACATATCTATCAATGATCAGCGTTACAGATGCGATTTATGTTATAAAGAATTACCGTGCGGACAGGCTTTAGATATCCACCGAAAGACATGCAGTTGTAATAGAATACAGAGTCCCGATCGAGATCGCCGTGAGGATTTCTTCGCGAAATTAGACCTTAGGAACAGATCATTCGGTATTCCGGGCACGCTGACCCCGCCGATGGAAAGGTTCACGCCCAAATTTGATGATGGGCATAGCATGTCTAACGGAATAAGGCATATCGATGCCGCTCGCGACTTGGCAGATATTCAATCTATCCTTAATGTTACATCGACAGGCAGTCTTTTAGAAAGACTCACTGGCACGAGGGTTTCTTTGGAAAGTTCTGTACTGACTCCTCCCGATACAATAGCTAAAGATAGAGATCAGGAAGAGACCCAAGATAATTTTGCAGCAGAGTTCAGACGAATGAAGTTGCGCGGTGAATTCCCTTGCAGATTATGTCCTGCAAAATTCCCTAATCTAAGAGCTTTGAAGGGACATAACAGAGTTCATCTAAGCGGAACAGGGCCTGGACCTTATCAATGCAATATGTGCCCTCATGCATCTCTAGATAAGGCTGCTCTCGTAAGACACATGCGTACACACAACGGTGATCGTCCATATGAATGTGCTGTTTGTAACTATGCATTCACAACAAAAGCTAATTGTGAACGTCACTTAAGAAACAGACACGCTAAAGTTACGCGAGAAGATGTGAAACGCTCCATTATCTACCACCCATCTGAAGATCCAAACAATGATGAAGTTAACTCGAAACTAGCAAGAGATGAAGTCAAGCGATCTCTTGCTTTCCATACCCCAGATATAGAGAGGCGAAGTGAAAGTACGGGCAGAGACACGCCACTAACACATTTCACACCCAGCTTCATAACTGAAAGACATCCAGTGGCTTCTCTCACGTCAAAACCTATGCCAGAAATACCATTGATTCCGAGAGAAAGTGAACAACCAACACCTAGGATCAAAGTGAAAGGTATAGGTCAGTTGACACAAATACCAGAGTATAGAACGCCGGAACTTTCATATAAAACTAATGATGTCCAATCTGATACTTATGATGATGAAGCGCCCGTTGATCTCAGCACAAGTGATAACAACAGTTGTGACGTCCTTGATCTCAGTAAAAAGAAACTTGATGCTGATGCCGATGAGCCTAAATGCCCACCGAGACCATCCTTTGAGCCGGACCCCGCCTCAGTTGCTGCATCGGCATTCGAAAAGACAAGATTCTTGTTAGCTCAGCAGAGGCTTTTTGAAAACTCCCttcctaaaattgatccttctTACTACGCTACTCAATTGTCTCAGCTGTACGCTGGTGCGGTACCAGGTCTCCCAGGTTTACCTCTaccgccatcttttccaatcaACCCCTACTTTCTTCAACCCTCTTTTTTTCCAACTGATTCCCAAGAACTTGCCGAAATAAAACAGCGTATACAGAAAGAAATAATACGTGGATTGAGCATGTCAGGTGGCAGACTTGTTGGTAATGAACCGGAGAATCAGCCCAAACAAGAACCTGAAGAAGAAGAGCAGAAGCCTGTGCCCCAAGTGATATCACCTGCTCCGTCccctaatcctgaatctcctCGACCCATAAGCAACAGTCTCGTTCCTCAAACTGACTCTGTGAAAATGGTTATCAAAAATGGTGTACTCATGCCCAAACAAAAGCAAAGACGTTACAGAACGGAGAGGCCATTTTCATGTTCCCAATGCTCTGCACGGTTTACATTACGCTCCAACATGGAACGTCACGTTAAACAGCAGCACCCTCAGCATTGGAGTGTAAGACGACCAGCTCCGCGAGCTCCCCCACCGTATCCTACCCCAGATACACTAGCTGATCGGGTTAAATTTGCTCTCTTAGCTCGCCACCTCGAAAGACCCTTACAGCAATCAGACCGCTCACCGATCAGACGAGATTCCGATGAAGTCGCTGACAACGAAGAAGATGAAGACGATACTTTGATTATTGATGAAGAACCTGAGCTTGACATCAAATCCGAGGAACATACAGCCGCACGCCGAGCTGCCGCTGAGATATTAATGGCAACATGTCAGCAGGAAATGAATAAAGACTTCGATCTCAAAATAGCtggtaatttaataaataagccCTTACCACTAACAACAGATAAGATGGAAACTGGTACCGATCCTATACCAGTTGGAGAAGCTTTACCTATACCAGTGGTACCAACGCGTAGTGACGAGGAAGAAGATGAGGAAGGTCTAGTCGCGTCTACTAGCGAGGGCAATAACTCTGGAAGCGATGaaaataaATCTGAATCAGATACAGGAACACAACCACCGAAAAAAAAATCTGCGTACAGCTTAGCCCCAAACCGAGTATCATGCCCTTACTGCCACCGAAAATTCCCCTGGTCATCATCTCTGCGACGCCATGTCCTCACGCACACTGGCCAGAAACCTTTCAAATGTCCCCACTGCCCATTACTCTTCACAACGAAATCTAATTGTGATCGCCATTTATTAAGGAAACATGGTGGATCAGCCAGAGCTATCCTTGCTGAACCTATTCCAGATACATTAGCAACGCCTCTACCAGTAAATGATATAAGAAATGTCCCTGAAAGACCTTTCAAATGCGCGTCTTGTCCAACAAGCACATTTTCTTCACTAGATACGTTAAAGAGACACATGTCTTCGAGACATGGTGCTATTGACTCCCAACCTGGCTCACCAAATCCTGAAGTGAATGAGGACATTCCAGATGGAGGATTGGTTTTCAAGTGCCATCTTTGTGAAGCGTCTTATGGAGAAAGAAATGTTGCTTTAGGGCATCTGGCTTCGTCACATTCAGCAGAGTATGAACTTTTGGTCAGTAAAGGAGCACTGGATGCTGCTAGTGATAAAAGCGAGAGTGCAGATGATGACGAAAGAGGGAAGTTCCCCGACCATGCCAATAGAAAGGTTGTCTGCGCATTCTGCGTCCGGCGCTTCTGGTCTGCAGAAGACCTCCGTAGACACATGCGCACACATTCAGGGGAGCGACCATTTGCCTGTGACCTGTGCAGGAGACGGTTCACCTTGAAGCATAGCATGCTACGTCACCGCAAGAAGCATAGGGACGAAGTCACCGATGATGATGAGGTTTCACCACCGAATACGCCTACTGAAGATTGTGTGCCTAATGGTTATCGTTACCACGAAGACGACGGCTCCGGCACCGATATACCGAGTAACGTCAACAACAACAACTCCCCACCGTCTGCGCCCTACGAGAAGAAACTGAAACTGGACATGACTTCGCGCAAATATTCGTCTGAAGCTGACAACGATGTGGAAAACGGCAGTGATCTCATCGGTAAACTACTCGGCATTCCTGACAAAACGATAAATAAACTGTTGTCGTCAGCAGATGAAGCTGCCAAAATACTCGGCGTCAACAAATGA
Protein Sequence: MQGAATAPAPPAAETPTSQQIKTEEAISAAKIETEEDMDKMKIDRPEPRATRTISIDSDNRSDRSEEDDTRRARKRAASTSPSPIPLDKRIARFECQKCRQRFDSVNAFDVHRFTAHGDDSRTGFDDLTFADYSSKKVSDIARGVYERSHHISINDQRYRCDLCYKELPCGQALDIHRKTCSCNRIQSPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHSMSNGIRHIDAARDLADIQSILNVTSTGSLLERLTGTRVSLESSVLTPPDTIAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDIERRSESTGRDTPLTHFTPSFITERHPVASLTSKPMPEIPLIPRESEQPTPRIKVKGIGQLTQIPEYRTPELSYKTNDVQSDTYDDEAPVDLSTSDNNSCDVLDLSKKKLDADADEPKCPPRPSFEPDPASVAASAFEKTRFLLAQQRLFENSLPKIDPSYYATQLSQLYAGAVPGLPGLPLPPSFPINPYFLQPSFFPTDSQELAEIKQRIQKEIIRGLSMSGGRLVGNEPENQPKQEPEEEEQKPVPQVISPAPSPNPESPRPISNSLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDTLADRVKFALLARHLERPLQQSDRSPIRRDSDEVADNEEDEDDTLIIDEEPELDIKSEEHTAARRAAAEILMATCQQEMNKDFDLKIAGNLINKPLPLTTDKMETGTDPIPVGEALPIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTLATPLPVNDIRNVPERPFKCASCPTSTFSSLDTLKRHMSSRHGAIDSQPGSPNPEVNEDIPDGGLVFKCHLCEASYGERNVALGHLASSHSAEYELLVSKGALDAASDKSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEVTDDDEVSPPNTPTEDCVPNGYRYHEDDGSGTDIPSNVNNNNSPPSAPYEKKLKLDMTSRKYSSEADNDVENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01083735;
80% Identity: -