Prid018561.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596258.1:12639558-12652375[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0095 0.73 11.2 0.3 1 23 413 435 413 435 0.97 2 11 0.066 5.1 8.6 0.2 2 23 443 465 442 465 0.95 3 11 0.035 2.7 9.4 4.7 1 23 469 491 469 491 0.97 4 11 0.044 3.4 9.1 1.9 3 23 527 548 525 548 0.87 5 11 0.0027 0.21 12.9 0.1 1 22 560 581 560 585 0.93 6 11 0.015 1.1 10.6 0.2 2 23 604 626 603 626 0.94 7 11 1.7 1.3e+02 4.2 3.9 3 23 647 667 647 668 0.96 8 11 0.0029 0.22 12.9 0.7 2 23 682 703 682 703 0.97 9 11 0.19 15 7.1 0.0 2 23 709 730 708 730 0.94 10 11 0.0019 0.15 13.4 4.4 1 23 736 758 736 758 0.98 11 11 2e-06 0.00015 22.8 1.3 1 23 764 787 764 787 0.98
Sequence Information
- Coding Sequence
- ATGGTGTCCTATTGTTGTGTAAAAGGATGCCACAATAATAGCAatcataaaaagaaagatccaAACTCGGTGATATCTTTTCACGCGTTTCCTTCAAATCCTGAGCATAAATTGAAATGGCTACGAGCTATAGGCCGCCCTGACTGGGAGCCTCCGAGTCACACTCGCGTCTGTAGCGCACACTTCAAGTTCGACCAGATCAACCATGATAGCTGCCGGACTAGGATAAAGGATGACGCTTTTCCTGTTTTTGCTTTACCTCCAAACTCAAACTTTGAAGCGTCACACATAGAGGTATGCAGGATATGCCTAGCCTCTGACCTCAGGTTGTACAGTCTCAAAGATGGCGACTTGAGGACAGCCATGGAGTCTGTTGCTGGATTTAATgAAAACTACAACATAGAAGGTTTACCACAGTTTGTATGCTACGAGTGTGCAGCTATCCTGATGAAATGTAACAGACTTATTGAGAAGAGTATGATAGCTCAGGCAACATTGCTTCATATATTTGCAGAGAATGGTCAGATAACAaaaaacctaataaagaaaCAAAACAGAAACCAGTTAAATCTAAAGTCATCATTATGTTGTCATAAAGTGCaaaatcattatgaatttaaatacgATTATGGTGACAATCTCTCCTATGCCATcagaaatgataaaataaataatgattacATACGGACTAATGATTCtaaaatagatttaaatattcatGTGGAACATGTAAAAATTAATGcagaagaacatttgaaaaaTGAAGTGGCGGAATCAGAACCAAATGATTCTGAAGAAATATTCTTGGAACAGAATGATAAAAAATCCAATTCTCTGGTATGTACCAGAGAAttggatttttttaaagaaattttaGGATCATGTGATCCTAAAATTTCTTTAGAAGTTAATGATATAAATACTGCTTCTGTCTTTAATGATCATGAAGATACTCCAGCTGAGTTTAAAGGCTCTCCAATTGATGATATTGTAATGTCTGATGATGAAAATGAATTTGAGGATGATGTTAAACCTAAAAGGATAGCAAAGAGAAAGAAACACAAAGTTTACGATGAATTAGAGAGTAAGAAATCTAAAAGGAAAAGTGTGAATGGATTGACACCAGATGAAGTGGATATGCAGAAGTATTTTACTATTGTGCGATTATCTTTAGAAGACCAAATAGAAGAATGGGAAAGGACTCCCATGAAACGGCATCTCACCAGCGAGACTATGTACGAGTGTGAAGTGTGCTCAAAGCTATTCGCTAAAGTCAACTCCTATCGAAATCACATCGCCAATCACGATCCTAGTCGCGGTAAAGTCGAGTGTCCAGTGTGCAAGCTACGCTTCAAAACAGACGTTCTAGCAAAGTATCACCTAAACAGAGCACACGCAAAGAAGTTCTACTGCAAGACCTGCCATAAAGTGTTTAATAATGTTGGTGTAGCCAAGAAGCACCACCGCTGGCACTCGGGCTACACATACAGGTGCAGTAGGGCGGGGTGCACGTTCAGTAGCGCGCACGAGTCGGCGCGCGGCGCGCACGAGCGCGACCAGCACGCGCACAAGCTCGCATGCGCGCACTGCGGACGCGCCTTCACCACTGATAAGGGACTTCACTTGCACACCGTCCATGCGCATAGGGAGCTGATGGACGTAGAATCCAATAACACGTACCGTTGCGAAGAATGCAATCTAAGTTTTAGTTCGGAGGGAGCACGGAGAGTCCATCTACTAACATCCATACTCCATAAGAAGAAATCCGATTTATgCGACACGACCCCGCGCGATCCCAGTCTCCAAACGACTTGCAGTAAATGCGGGATGGAGTTGAAGTCATTACGCGAACTGATCGCTCATACCAAGGCGGAACACCCTCGACCTTCGCAGAAGAGAACCATGTATCGGCTACCTGATGACAAGTACCCTACTGGCTGTGAACATTGTGGTGCAGTAGTGAAGAACCGCAAGGAGCACTGGTGGCACGTGCGGCGACACCACCCCAAGCTGAAGCACTCCTACCGACCCGTCGTCACCGCCGTCTGCGACACTTGCGGGAAGGGCTTCCAGAACTCGACTAAACTGGATCTCCACCGGCTCCGTCACCGCAGCCCTAGCGTCCCGTGCGCGCTGTGCCCGCGGCTGTTCTACGACAAGTACGCGGTCGCGCGCCACGCCGCCGTGCACTCCGCCGCCAGCCCGCACACCTGCCGCCTCTGCGGCCGCGGGTTCAAGCTCAAGTGCTATCTTGAGAGGCATGCCAGGGTACACACAGGTGTAACACCATACGAATGCACGATATgtgataaaaagtttaaattctCAACTAGTCTCAACCTACACGTCCGCACCGTACACTACAAGCTGCCGCACCCGCCAAGAAAGAAGCGAACATGCAAAGCCACCAGAAATTCAAACTTAGTTGATACAATTAATGATaatgttatataa
- Protein Sequence
- MVSYCCVKGCHNNSNHKKKDPNSVISFHAFPSNPEHKLKWLRAIGRPDWEPPSHTRVCSAHFKFDQINHDSCRTRIKDDAFPVFALPPNSNFEASHIEVCRICLASDLRLYSLKDGDLRTAMESVAGFNENYNIEGLPQFVCYECAAILMKCNRLIEKSMIAQATLLHIFAENGQITKNLIKKQNRNQLNLKSSLCCHKVQNHYEFKYDYGDNLSYAIRNDKINNDYIRTNDSKIDLNIHVEHVKINAEEHLKNEVAESEPNDSEEIFLEQNDKKSNSLVCTRELDFFKEILGSCDPKISLEVNDINTASVFNDHEDTPAEFKGSPIDDIVMSDDENEFEDDVKPKRIAKRKKHKVYDELESKKSKRKSVNGLTPDEVDMQKYFTIVRLSLEDQIEEWERTPMKRHLTSETMYECEVCSKLFAKVNSYRNHIANHDPSRGKVECPVCKLRFKTDVLAKYHLNRAHAKKFYCKTCHKVFNNVGVAKKHHRWHSGYTYRCSRAGCTFSSAHESARGAHERDQHAHKLACAHCGRAFTTDKGLHLHTVHAHRELMDVESNNTYRCEECNLSFSSEGARRVHLLTSILHKKKSDLCDTTPRDPSLQTTCSKCGMELKSLRELIAHTKAEHPRPSQKRTMYRLPDDKYPTGCEHCGAVVKNRKEHWWHVRRHHPKLKHSYRPVVTAVCDTCGKGFQNSTKLDLHRLRHRSPSVPCALCPRLFYDKYAVARHAAVHSAASPHTCRLCGRGFKLKCYLERHARVHTGVTPYECTICDKKFKFSTSLNLHVRTVHYKLPHPPRKKRTCKATRNSNLVDTINDNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01251812; iTF_00007481; iTF_00007156;
- 90% Identity
- iTF_01251812;
- 80% Identity
- iTF_01251812;