Prid026676.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596269.1:1018836-1026035[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0034 0.27 12.6 0.3 2 23 211 232 210 232 0.97 2 12 4.3e-06 0.00034 21.7 1.5 3 23 240 260 238 260 0.98 3 12 3.1 2.4e+02 3.3 3.8 1 23 271 293 271 293 0.80 4 12 0.42 32 6.1 6.0 1 23 555 577 555 577 0.98 5 12 0.00067 0.051 14.9 0.8 2 23 583 605 582 605 0.96 6 12 2.3e-05 0.0018 19.4 0.6 2 23 614 635 613 635 0.96 7 12 0.00033 0.025 15.8 2.7 3 23 640 660 639 660 0.98 8 12 0.33 25 6.4 1.6 2 23 674 696 673 696 0.96 9 12 0.0022 0.17 13.3 1.0 3 23 704 724 702 724 0.97 10 12 0.021 1.6 10.2 2.4 2 23 731 752 731 752 0.98 11 12 4.5e-05 0.0035 18.5 2.3 1 23 758 781 758 781 0.97 12 12 0.00016 0.013 16.8 1.9 1 23 785 808 785 808 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAGGTATTTCGGACACTTTGTTTTTCGCTAAAAAGTATTCCATTACTAGCGAAATTCGAGAAGGACGTAATATAAAGTCTGAGGATGCCGTGGAACCTAAAATAGTAACTAGGAAACCGTTATCAACAAAGTATGCGGTTGAGTTTCTATTAGCGGGAACGCTCAGATCTAAAGTTTGTCGATATTGTCTCAATATTTCACATTCCCTCTCTGAATTGGATCAAATATTTCAAATAGCTGGGAAAGGATCACTCTATAAAGTTACTGTAAGAGATATGATTGCAAGTTTCTATCCTGTCAAGGTTATTGAAGACTCAAATTTCCCAAACAAAATATGTGATAAATGCTTAAACCGTGCTTTGAGTTCATATTTATTCATGCAGCAGTGTGAGCAATCTGAACGTGCTTTACGTAACTGCTTTGAAGATATTTTTGAGAAATTAGAAAAGCTTGACCCGTTGGAGCGTACTAAGAAAAGAGGCCGTCAGAAGTTGCACCCAAATTACAATGTGTTGTACACAGAACATGGTAAAGTACTTGATTATGCTGAACCTATAATAAACCTTATTAATACAGCATCAGAACGCTTGGATGAAGGTGAACTTACTGTTTCAAACGAATTAGAATGCAAAAAATGCTGGAAGGCATTACCAAATCTACAATCACTAATGAATCACGAACGTAGCCACCCGAAAACTATGTGGTATGGTTGCAAAATGTGCGGCAAATCATTTGCCAAATACAACCAATTGAAAAAGCATCTAAATACACATATAGATCACCAACCCGTGCCGGTTCCGAAATTTAAATGCAACACCTGTGGGCATACAAGCGATAATTATAACCTACACTTACAACATATGGAAAACCATAAGTTTAAGACGGTTGTCAAGCACTTAGTTGAGAAGAAGATGAATGTGCTCTGTACGATTTGTTTGAATAAGGATGTGAATATGACGGAGTTGGATAAGATGGTTTGCATCCATGGTGGATACCCTGAACTGACCGGTGATAGAACTTTGTATAGCATTTTGGGAACTACATTACCTGATATGAACACGCTATATAACTACACTGGGACAAAAATATGCGAAAAGTGCCTCAATCACGCAATCACTTCATACgttttcataaatagatactaTTATATCAGAAATAGATTAAACACATGTGTTAATGCTATGTTAGAAAGCTTAAATAACTCTGAACCAACAGAAGCAAGTATGTTTGTAGAAATTAGTCAAAGCCTTATTTATCCGAATGAATTCTTTGATGACAACTTATTGCTAGACGAAAATGAATTTATAGACGATGAAAAGATTAAAATTGATGTATTAGAAGATGAATTTAGAATTGAATCTGAAAGCGAAGAGGAGGCAGAAACTGAATtagatgaaataaaaaatgagGAAATTAAAGGTGAAAATTTCGAGTCTACAattgatgattttgatgatAAAACAAGGTAtttagatgatgatgatgtcctAATAAACAATCTAGCTAGAGATGCAAAAAAGACTTACATGAAAAGTAGATTAGTTAATGGTTACCAATCAGTTAATAATGATTATGATTCAGCTAGTAACATCTGTAGTGAATTCTTAACAttcaataaagataaaaaaccTATTAGACCAATGCAGAAATGCAAATTTACGTGTCCTCTATGTTGTAAACATTTCATATCAGATTATTTCTTGAAGAAACACGTATTGAAACacgtaaataaaaaagttgtgtGTACTGTTTGCAATAGAGATTTCaagtcaaaattttatttatatgaacaTACAAAAATGGTTCATATATTGAACCGCAGCTCTTATATCTCATGTAAAACTTGTGGTCGGACATTTATAGATGCAAATAAATtgttaaaacatataaaaaatcaTAAAGTTAAGGATTGCCAGTTGTGTGATAAAACATTCATTTCTCAGAATCATTATGATAGTCATATGCAGAGGCACTCTGTTAAACTAAGAATTATAAAAGAAAGAAGAGCGCAAACTTGCAGTTTCTGCGAAAGGGAATGTTCGAACGATAATGAACTGTCTTTACATGTCAATAAAGTACATTTGCAAATTAAACCGTACGGTTGTGATATGTGTGAAAAACAATATTACACTGAATATAATTTAAGGAGTCATAAGAAGTTACATAGTATACATAAGAAAGAAAAGTGCGAattttgcaataaaaatatgaaatctaGGAAACAATTAGTGATTCATGTTAGGAAACATATTGGAGCGAAGCCTTTTAGCTGTCAAATATGTGGACAATCTTTCTACTCTCAAATGAAAACAAAACGGCACATGAGAGTATACCATGGCGGTGGATTTTGTTGTAaagtttgtaaaacagttttcgtAACCAAATATGGGCTTAAAGATCACGTGAATATGGTTCATAGTTATATTTAA
- Protein Sequence
- MEEGISDTLFFAKKYSITSEIREGRNIKSEDAVEPKIVTRKPLSTKYAVEFLLAGTLRSKVCRYCLNISHSLSELDQIFQIAGKGSLYKVTVRDMIASFYPVKVIEDSNFPNKICDKCLNRALSSYLFMQQCEQSERALRNCFEDIFEKLEKLDPLERTKKRGRQKLHPNYNVLYTEHGKVLDYAEPIINLINTASERLDEGELTVSNELECKKCWKALPNLQSLMNHERSHPKTMWYGCKMCGKSFAKYNQLKKHLNTHIDHQPVPVPKFKCNTCGHTSDNYNLHLQHMENHKFKTVVKHLVEKKMNVLCTICLNKDVNMTELDKMVCIHGGYPELTGDRTLYSILGTTLPDMNTLYNYTGTKICEKCLNHAITSYVFINRYYYIRNRLNTCVNAMLESLNNSEPTEASMFVEISQSLIYPNEFFDDNLLLDENEFIDDEKIKIDVLEDEFRIESESEEEAETELDEIKNEEIKGENFESTIDDFDDKTRYLDDDDVLINNLARDAKKTYMKSRLVNGYQSVNNDYDSASNICSEFLTFNKDKKPIRPMQKCKFTCPLCCKHFISDYFLKKHVLKHVNKKVVCTVCNRDFKSKFYLYEHTKMVHILNRSSYISCKTCGRTFIDANKLLKHIKNHKVKDCQLCDKTFISQNHYDSHMQRHSVKLRIIKERRAQTCSFCERECSNDNELSLHVNKVHLQIKPYGCDMCEKQYYTEYNLRSHKKLHSIHKKEKCEFCNKNMKSRKQLVIHVRKHIGAKPFSCQICGQSFYSQMKTKRHMRVYHGGGFCCKVCKTVFVTKYGLKDHVNMVHSYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007453;
- 90% Identity
- iTF_00007453;
- 80% Identity
- -