Prid029319.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596272.1:8582816-8595497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6 1.2e+02 4.3 1.2 1 23 414 436 414 436 0.85 2 11 0.23 18 6.9 0.4 1 23 469 491 469 491 0.91 3 11 0.00035 0.027 15.8 3.4 1 23 496 519 496 519 0.96 4 11 0.79 61 5.2 0.1 2 19 527 544 526 549 0.88 5 11 4.8 3.7e+02 2.7 2.4 3 20 559 576 557 578 0.92 6 11 0.037 2.8 9.4 0.1 2 21 588 607 587 608 0.91 7 11 3.1e-05 0.0024 19.0 3.4 1 23 616 638 616 638 0.99 8 11 0.0001 0.0081 17.4 0.6 1 23 674 697 674 697 0.95 9 11 5.2e-06 0.00041 21.5 1.1 1 23 703 725 703 725 0.98 10 11 0.00012 0.009 17.2 0.2 1 23 731 753 731 753 0.98 11 11 4.6e-06 0.00036 21.7 0.1 1 23 759 782 759 782 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTAGCAAATATTTTCCTAAACCTGAGCACAACTCCCTCGTTGCGAGTGTGTCGAGGATGTCTCGCTACAGACGCACGACTGTACGACATGCGCCAGGACCGACTGATGGAGGCCTATAACACACTAATGAGTACCGTTCACGCTATACAAGTGACAGACGACCTGCCACATTACTTATGCAGCTACTGCGCTGTACTGCTGCTCAAGTGTGACGCATTCAGAACAAAGTGCATAGATTCACTAATAGTGCTTAGAAATGCTAGACAACAACATATTAATCTTACTTcagaacatataaaaataatagacaGACCTACATACTTCATACAATCTGAATTAGAACATATCAGCTATGTAGATGATACTCCTGAACAAAACTATTCTGTTGATTCTATAGATTGTGCTTTAACAGCCGAATCTGATTGTTCAGTTagtgaaaacaaaataaatgttaattttaaagCCAAATCAATGATTAAAGATCATGACCGTGCGATAACATATTCAGATAATGATATTAAAAGACTACTAAAGAAACACTTTGATAGTGAAAGATGTTTATTAAAAGACTTTAAAGTTAACATAGATTATGAAGCAAGTGAAGATATAAATCACATTAGAGACCATCAAATGAATCAGTTGTCTGAAATTATTAATCATATACAATATTCTAGTAAGACAAGTACTGAATTACTGACAATATTAGATGAAGATAtactaaaatgtaataataaatcCTCGAAATCAGAGTCCAATCCAATACTAAAAACTGAAAATGAAGAGACGGTAGCTCAAATTGGTGAAGAGCATAAACATCAGGACACAGTACaagataatacaaataaatcaatattaGAAATACATTCTGATGATGACAGTGTAGATTTAAATGCAGAAATTACTTGTTTGCTTCAAAATGACGAATCAAACATAGAAGTATCTGAAGATGAACTTTTCGTCTTTGAAACCCAGTATGATGGAATAAACGAAAACTCTGACTCGGAAGAAGATATTCCTATTCCAAAGCCAAAAATCAACGTGAAAAAATTTGTACCAAATAAGATACGCtgtaaaaatatcaatggaaaattaaaaaaacgacAAATTGATAGGGATAAGATTACCGCTGAGAGCTTTGCAAAATATAACATAGAGGTAAGACACCTAAGTAAAGAGGAACAAATTAAGGAAATCAATGATAGAAAGGAGTctgataattataaaaatggaCAGTTTAATTGCAATATTTGCTTTAAAGGATTCATAATTGAAGAAACACATAAAAATCACATGGTGCTACATGATGATTCCAGCGGCAAGTTCGTGTGTGAAATCTGTCAGTGTCGCTTCTTGACAAAGAAGCCGTGTAGAAATCACCAAAGGCGCCACCGTACAATATTCACTTGCAAAGAATGCGGACACGCTACGAAGAATGGAGTAGAAGCAGTTGAACATTATAAATGGCACAAAGGAAAGATGCACTCCTGCGACTATTGTGGAAAAGAATTCCGAAAAAATTCAACTAAATACAATCACATTAAGATGATCCACCCGACCAGTGAACAGCTGGTGCGTTGTGAGATCTGTGGAGACTCGTTCAATGGACTGGGAGGACTGAAATATCATgataataaggcacataaagagATGAATTCCCCGGAGTGTCTATGTTCTGGTTGCGACACTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCAAGGAACCGACGGACTGTGCGACACGATACACAAGTATTGTGTGCGCTGCGGCATGTCGTTTGAGACTGAAGAACTGCTGAAGGAACATGAGAAAGAACAACGGAAACCACAGAATCAGTTTAAATGTGACGTGTGCCGAAAAGTGTTTgcaaatttcacttatttcaaatcgCACCAGCGAACTCACCTGCCGGCTTATACCAGGTACCGCAAATCGTTAGACAAGAGGAAACTAACCCGCCGCCTCGAGTGTGATAACAATGACCCTACGAGTAGCGGCCCTGCTTTTGGGTTCATGTGTGAACTGTGCGGGAAGGTCTCCAAGACAAAGGGCGCTCTACAGGTGCATCATCAAAACGTGCATACGAACGAGAGACCGTTCTCGTGCTCGCTCTGCACGAAGACATTCAAAACTGCCATCAGCTTGAAGGCCCACACGCGCGTCCATACTGGAGAACGTCCGTTCCAGTGCGAGCGATGCCCAAAAGCGTTCCAGATTCGGCCGAATCTCGAAAGACATCAATTAGTACACACAGGGGAGCGTCCATACTCGTGCGACATCTGTGGGAAAACCTTCAACGATGTGTCAGCCATGAAGATCCACGTCAAGACTGTCCACATGAAGGAGCCCATGCCGCCGCGCGTACGGCGCGGCCGGACTCGCCGGAACAAGAATACACagtga
- Protein Sequence
- MAVANIFLNLSTTPSLRVCRGCLATDARLYDMRQDRLMEAYNTLMSTVHAIQVTDDLPHYLCSYCAVLLLKCDAFRTKCIDSLIVLRNARQQHINLTSEHIKIIDRPTYFIQSELEHISYVDDTPEQNYSVDSIDCALTAESDCSVSENKINVNFKAKSMIKDHDRAITYSDNDIKRLLKKHFDSERCLLKDFKVNIDYEASEDINHIRDHQMNQLSEIINHIQYSSKTSTELLTILDEDILKCNNKSSKSESNPILKTENEETVAQIGEEHKHQDTVQDNTNKSILEIHSDDDSVDLNAEITCLLQNDESNIEVSEDELFVFETQYDGINENSDSEEDIPIPKPKINVKKFVPNKIRCKNINGKLKKRQIDRDKITAESFAKYNIEVRHLSKEEQIKEINDRKESDNYKNGQFNCNICFKGFIIEETHKNHMVLHDDSSGKFVCEICQCRFLTKKPCRNHQRRHRTIFTCKECGHATKNGVEAVEHYKWHKGKMHSCDYCGKEFRKNSTKYNHIKMIHPTSEQLVRCEICGDSFNGLGGLKYHDNKAHKEMNSPECLCSGCDTQFYCSDAFKAHQGTDGLCDTIHKYCVRCGMSFETEELLKEHEKEQRKPQNQFKCDVCRKVFANFTYFKSHQRTHLPAYTRYRKSLDKRKLTRRLECDNNDPTSSGPAFGFMCELCGKVSKTKGALQVHHQNVHTNERPFSCSLCTKTFKTAISLKAHTRVHTGERPFQCERCPKAFQIRPNLERHQLVHTGERPYSCDICGKTFNDVSAMKIHVKTVHMKEPMPPRVRRGRTRRNKNTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252248;
- 90% Identity
- -
- 80% Identity
- -