Prid029093.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596272.1:5382109-5402920[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 1.5 10.3 0.3 1 23 204 227 204 227 0.95 2 11 0.0045 0.35 12.2 3.3 2 23 235 256 234 256 0.97 3 11 0.0078 0.6 11.5 0.6 1 23 260 283 260 283 0.97 4 11 7.8e-05 0.006 17.8 0.9 1 23 322 344 322 344 0.98 5 11 0.0079 0.61 11.5 1.3 3 22 356 375 355 379 0.89 6 11 0.00072 0.055 14.8 1.4 1 23 419 441 419 441 0.97 7 11 0.036 2.8 9.4 0.3 2 21 450 469 449 474 0.90 8 11 2.1e-05 0.0016 19.6 0.2 1 23 482 505 482 505 0.95 9 11 0.0003 0.023 16.0 3.6 1 23 511 534 511 534 0.96 10 11 4.4e-05 0.0034 18.6 1.0 3 23 543 564 541 564 0.91 11 11 6.8 5.3e+02 2.2 3.9 1 23 570 593 570 594 0.94
Sequence Information
- Coding Sequence
- ATGGATACCGAAGAAAACAGTTTATGTTGCGGTTGCCTTTGCGCTGGACGCAAACTGCAATCGCTAGATGAATTTTGGAAAAGGCAGTGTTTTTTGGAAATAATCAATGAAATACCTATCGCACAATCTGATGGTCTACCGGTGTTGATATGTTTCGAATGTGAAGCCCTCATCGTCCGCATCATAAAATTCAAGCGTCAAGTGAAACAATCCTATAAAACATTTTACCATTATACAAAACAGAATCTCAATACAAGTGATATACAAAATCTACCAAGACTACGTACACACAAAGTAGTAAACATAACCTTACCTGACTCATTAGAAAATGACACTATTGTCAAGCACGAAACTATAAAACCAGAAGCGAAACCAACCGAAGTAGATGTAAAAGAAGAATTAGATTTATTATACTCTGATCATTATTCGGATGACGATATAAGTCTACAAGAAATAAgtaagaaaaagaagaaggtAATAAACGGTAGgacaaagaagaagaagaaacgGAAAGTCAAAGAGTTGTACAAGGAAGTAACATTGAGTAAAGAAGAATTGGTAGAAGAAAGAAGACTGTTACGGTTGAGAGATGAATACGTAAATGCTATGTTTTGCTGTGAATTATGTATAGTTTCATTTCCTAATGCCGATGATTTGAAGGATCATATCAGTATTAAGCATGAGAAGAACGCAGCCAACCTTAAATGCGACATATGTCAATGCTCGTTCAGTTCTGAAGTATCGTACAACTACCATAGGAACAAACACACGCGCCGGTATCAATGCGCGGAGTGTGACGCGAGGTTTGGAAGCAAGCGAGCTGTACATAAACATTGGGACACTTCACATTATACTAGTATCAATGGAGAATACAACATGCAGTTTAAATCAAATACCAATGGTATAACCGAGGAATTAGTTGCAAAGGAATTAGATGAGAGTACAAAAGCCGATACGCCGTCGTTTCCATGTGAATTGTGCGAGAAAACATTTAGGTGGAAGACTTCATTACGGAAACACATTGAGACACATCGCATTGAGAATGGACAGAAGAGGAAACCGTATTGTGAACCTTGCCGCTTAACATTTACAACGACCTCCAACCTACAGAAGCATGTGAAAACAAGTTCCAAACATCAAATTCAATTAAAACTTAGGAAGCTAAACGACATTCCAGAAGAAGGTACAAGTTTAGAAAAGCACCAAGCTGTCATAGATGAGATCAAGTGTTCAGTAAACAGTTCTCGGCAACAGTTCCCGTGTCCGCAGTGCGACAAGAAGTTCCAGTGGCGCGGGAACCTGCTCAGGCACCTGCATAGTCATGCAGCCAGGGCTAACGGTGAATTAGTATGTGAACCGTGCAACCGCACGTTCTCGTCCATAGCGACGTTCAAACAACACATGGCGATCAGCAAGAAACATGTCACTGAGAACGAACTCAATTACGTATGCGGTGATTGTGGTAAGAAATTTGCGAACAAAACACGACTAAGAGATCATGTCAACTGGGAACATCTGAAGAACTACGTCCATACGTGTCCGGTGTGTCAAAAGGTCTTCAAAACGCACACTTCGTTGTACTTACATAAGCAAGTTGTACATAAAAAGGACAGCGCTGAACATCTGTGTGATCACTGCGGTAAACCATTCCCGAACCAAGCTAAACTACGCAGTCACATAACGGCGATTCATTCTGGTTCGTCTCCTTACGCGTGCAGCGCGTGCGCGGCGCGGTTCAGCTGGCACTCGTGCCTCTCGCGGCACGTGCGCAGAGTGCACCACCCGGCCAGGAAGCGTGCCACACCTGGACACGTGCAAGGGAGATACGTTCCTAAAACTCATTCTCATGGTAGCTTTAAGAAAGCATTCGCTGGCAACACCAAGAATAAGCGAGAAAAGAAGAAGTCTGATACAATTGAAGATATCCTTGAGGAGATTCTAGGGAAATTCACAAATGACCGCATGTCGCCGATTTTTAGAAGTGAATCGAAAAATATAAAATCAGAAATAATACATTTCGGTGATGATAAACCGTCTGTGATGTACGAAATCAAAACGAACACATTTCTCAAGTTTATGAAAGAAATCCTTGCATCGGAACCTGTGGAGAAACTTGTCGACAAAGTTGCTCGTAAGGCAGGTGTGGTATTCCGCTCTTCTATGAGAGACGAGAAGCCAAAATAA
- Protein Sequence
- MDTEENSLCCGCLCAGRKLQSLDEFWKRQCFLEIINEIPIAQSDGLPVLICFECEALIVRIIKFKRQVKQSYKTFYHYTKQNLNTSDIQNLPRLRTHKVVNITLPDSLENDTIVKHETIKPEAKPTEVDVKEELDLLYSDHYSDDDISLQEISKKKKKVINGRTKKKKKRKVKELYKEVTLSKEELVEERRLLRLRDEYVNAMFCCELCIVSFPNADDLKDHISIKHEKNAANLKCDICQCSFSSEVSYNYHRNKHTRRYQCAECDARFGSKRAVHKHWDTSHYTSINGEYNMQFKSNTNGITEELVAKELDESTKADTPSFPCELCEKTFRWKTSLRKHIETHRIENGQKRKPYCEPCRLTFTTTSNLQKHVKTSSKHQIQLKLRKLNDIPEEGTSLEKHQAVIDEIKCSVNSSRQQFPCPQCDKKFQWRGNLLRHLHSHAARANGELVCEPCNRTFSSIATFKQHMAISKKHVTENELNYVCGDCGKKFANKTRLRDHVNWEHLKNYVHTCPVCQKVFKTHTSLYLHKQVVHKKDSAEHLCDHCGKPFPNQAKLRSHITAIHSGSSPYACSACAARFSWHSCLSRHVRRVHHPARKRATPGHVQGRYVPKTHSHGSFKKAFAGNTKNKREKKKSDTIEDILEEILGKFTNDRMSPIFRSESKNIKSEIIHFGDDKPSVMYEIKTNTFLKFMKEILASEPVEKLVDKVARKAGVVFRSSMRDEKPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417209;
- 90% Identity
- -
- 80% Identity
- -