Prid029315.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596272.1:8515462-8533026[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.24 12.8 0.6 1 23 391 413 391 413 0.96 2 12 0.034 2.6 9.5 3.3 1 23 420 442 420 442 0.98 3 12 1.3 98 4.5 0.6 1 11 446 456 446 468 0.75 4 12 0.00019 0.014 16.6 3.0 1 23 473 496 473 496 0.96 5 12 0.28 22 6.6 0.1 2 23 504 526 503 526 0.95 6 12 2.3 1.8e+02 3.8 1.6 3 20 536 553 534 555 0.92 7 12 0.049 3.8 9.0 0.1 2 20 565 583 564 585 0.92 8 12 9.2e-06 0.00071 20.7 3.3 1 23 593 615 593 615 0.99 9 12 0.0057 0.44 11.9 3.8 2 23 652 674 651 674 0.93 10 12 9.9e-06 0.00077 20.6 1.3 1 23 680 702 680 702 0.98 11 12 8.1e-05 0.0063 17.7 0.4 1 23 708 730 708 730 0.98 12 12 5.1e-06 0.00039 21.5 0.2 1 23 736 759 736 759 0.98
Sequence Information
- Coding Sequence
- ATGAGCACAACATCCTCGTTGCGCGTGTGTCGAGGATGTCTCGCTACAGACGCACGACTGTACGACATGCGCCAGGACCGACTGATGGAGGCCTATAACAATCTACTGAGTACCGCTGTACAAGTAACAGATGACCTGCCACATTACTTATGCACCTACTGCGCTGCACTGCTGCTCAAGTGTGACGCATTCAGAACAAAGTGCATAGATTCGCTAATAGTGCTTAGAAATGCCAAACTCCAACATTTTAATCTTATTTcagaacatataaaaatattagaccgacCCACATACTTGATACAATCTGAATTAGAACAAATTAGATGTGTAGATGATACTCCTGAACAAAACTATTCTGATACATATTCAGATACTGATGATTCTATAGAcaaaataaatgttaattttaaagCCAAATCAATTACCAAAGATCATGACTATGCGATAGCATATAAAGATAATGGTATTACAAGACTACTAAAGAAACACTTTGATAGTGAAAGATGTTTATTAAAAGACTTTAATGTTAACATAGATTGTGAAGCAAGTAAAGATATAATTGACATTAGAGACCATCAAAAGCGTCAGTTGTCTGAAATTATTAATCATATACAATATTCTAGTAAGGCAAGTACAAAATTACTGAAAATATTAGATGGAGATTtactaaaacataataataaaacctcGAAATCAAAGTCCAATCCAACacttaaaaatgaaaatgaagaGACGGTAGCTCAAGTAGGTAAAGGGCATTTACATCAGGACATAGTACAAGATAATAGTAATAAATCGATATTAGAAATACATTCTGATGTTGACAGTGTAGATTTAAATGCAGAAATCCCTTGTTTGCTTCAAAATGATGAATCAAACATAGAAGTATCTCAAGATGAACTATTCGTCTTTGAAACCCAGTGTGATGGAATAAACGAAATCTCAGAATCGGAAGAAGATATTCCTATACCAGACCCAAAAACCAACGCGAAAAAATGTGTACCAATGGAAAATATCaatgaaatattaaaagaaCGACAAATTGAGAGGGATAAGATTACCGCTGAGAGCTTTGCAAAATATAACATAGAGGTAAAACACCTAAGTAAAGAGGAACAAATTAAGGAAATTAACGATAGAAAGGAGTctgataattataaaaatgcaCAGTTTAAATGCAACATTTGCTTTAAAGGATTCGTTATTGAAGAAACATATAAGAATCACATGGTGCTACATGATGATTCCAGCGGCACGTTCGTGTGTGAAATCTGCCAGTGTCGCTTCTTGACAAAGAGGGCGTGGATGAAGCACCAAAGGTACCACAGTGACGTATTTACTTGCAAAGAATGCGGACACACTACGAAGGCAGGACAAGCAGCAGTTGAACATTATAAATGGCACAAAGGAAAGATGCACTCCTGCGACTATTGTGGAAAAGAATTCCGAAAAAATTCAAGTAAATACGCACACATTAAGATGAGCCACCCGACCAGTGAACAGCTGGTGCGTTGTGAGATGTGTGGAGACTCATTCTATGGACCGACAGGACTCGTATATCATGAAAATAAGTCACATAAAGAGATGAATTCCCCGGAGTGTCTATGTTCTGGCTGCGGCATTCAGTTCTACTGCTCGGACGCGTTTAAGGCGCATCAAGGAACAGACGGACTGTGCGACACGATACACAAGTATTGTGTGCGCTGCGGTATGTCGTTTGAGACTGAAGAACTGCTGAAGGAACATGAGTTAGAACAACTAATACCACAGCATCAGTTTAAATGTGACGTGTGCCAAAAAGTGTTTgcaaatttcacttatttcaaaaggCACCAGCGATCTCATCAGCCAGCGTATGTCAGGTACCGCAAATCATACGTCAAGACGAAACCAACCCTCCGCCCCATGTGTGATAACAACGACCCTACGAGTAGCGGCCCTGCTCTTGGGCTCATGTGTGAACTGTGCGGGAAGGTCTCCAAGAACAAGACCACTCTACAGACGCATCATCACAATATGCATTCGAACGAGAGGCCGTTCTCGTGCTCGCTCTGCACGAAGACATTCAAAACTGCCATCAGCTTGAAGATCCACACGCGCGTCCATACTGGAGAACGTCCCTTCCAGTGCGAGCGATGCCCGAAAGCGTTCCAGATTCGGTCGAATCTCGATAGACATCAATTAGTACATACAGGGGAGCGTCCATACTCGTGCGACATCTGTGGCAAATCCTTTACCGATGTGTCATACATTAAGATCCACGTCAAGACTGTCCACATGAAGGAGCCCATGCCGCCCCGCGTACGGCGCGGCCGGACTCGCCGGAACAAGAATACAcagtga
- Protein Sequence
- MSTTSSLRVCRGCLATDARLYDMRQDRLMEAYNNLLSTAVQVTDDLPHYLCTYCAALLLKCDAFRTKCIDSLIVLRNAKLQHFNLISEHIKILDRPTYLIQSELEQIRCVDDTPEQNYSDTYSDTDDSIDKINVNFKAKSITKDHDYAIAYKDNGITRLLKKHFDSERCLLKDFNVNIDCEASKDIIDIRDHQKRQLSEIINHIQYSSKASTKLLKILDGDLLKHNNKTSKSKSNPTLKNENEETVAQVGKGHLHQDIVQDNSNKSILEIHSDVDSVDLNAEIPCLLQNDESNIEVSQDELFVFETQCDGINEISESEEDIPIPDPKTNAKKCVPMENINEILKERQIERDKITAESFAKYNIEVKHLSKEEQIKEINDRKESDNYKNAQFKCNICFKGFVIEETYKNHMVLHDDSSGTFVCEICQCRFLTKRAWMKHQRYHSDVFTCKECGHTTKAGQAAVEHYKWHKGKMHSCDYCGKEFRKNSSKYAHIKMSHPTSEQLVRCEMCGDSFYGPTGLVYHENKSHKEMNSPECLCSGCGIQFYCSDAFKAHQGTDGLCDTIHKYCVRCGMSFETEELLKEHELEQLIPQHQFKCDVCQKVFANFTYFKRHQRSHQPAYVRYRKSYVKTKPTLRPMCDNNDPTSSGPALGLMCELCGKVSKNKTTLQTHHHNMHSNERPFSCSLCTKTFKTAISLKIHTRVHTGERPFQCERCPKAFQIRSNLDRHQLVHTGERPYSCDICGKSFTDVSYIKIHVKTVHMKEPMPPRVRRGRTRRNKNTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007487;
- 90% Identity
- -
- 80% Identity
- -