Basic Information

Insect: Polyploca ridens
Gene Symbol: -
Assembly: GCA_951394255.1
Location: OX596272.1:8096543-8112390[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00066 0.051 14.9 0.4 1 23 289 311 289 311 0.98

2 12 0.72 55 5.3 0.7 1 16 318 333 318 340 0.86

3 12 0.041 3.2 9.2 3.8 1 23 344 366 344 366 0.98

4 12 0.00033 0.025 15.8 3.3 1 23 371 394 371 394 0.97

5 12 0.84 65 5.1 0.1 2 23 402 424 401 424 0.91

6 12 0.64 50 5.5 1.2 1 20 432 451 432 453 0.92

7 12 0.05 3.9 9.0 0.0 2 19 463 480 463 482 0.94

8 12 0.024 1.9 10.0 2.1 1 21 491 511 491 516 0.91

9 12 5.5e-05 0.0042 18.3 0.4 3 23 534 555 532 555 0.95

10 12 1.1e-07 8.5e-06 26.8 0.4 1 23 561 583 561 583 0.99

11 12 5.8e-05 0.0045 18.2 0.4 1 23 589 611 589 611 0.97

12 12 2e-05 0.0015 19.7 1.8 1 23 617 640 617 640 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00066	0.051	14.9	0.4	1	23	289	311	289	311	0.98
2	12	0.72	55	5.3	0.7	1	16	318	333	318	340	0.86
3	12	0.041	3.2	9.2	3.8	1	23	344	366	344	366	0.98
4	12	0.00033	0.025	15.8	3.3	1	23	371	394	371	394	0.97
5	12	0.84	65	5.1	0.1	2	23	402	424	401	424	0.91
6	12	0.64	50	5.5	1.2	1	20	432	451	432	453	0.92
7	12	0.05	3.9	9.0	0.0	2	19	463	480	463	482	0.94
8	12	0.024	1.9	10.0	2.1	1	21	491	511	491	516	0.91
9	12	5.5e-05	0.0042	18.3	0.4	3	23	534	555	532	555	0.95
10	12	1.1e-07	8.5e-06	26.8	0.4	1	23	561	583	561	583	0.99
11	12	5.8e-05	0.0045	18.2	0.4	1	23	589	611	589	611	0.97
12	12	2e-05	0.0015	19.7	1.8	1	23	617	640	617	640	0.97

Sequence Information

Coding Sequence: atgcCTCGTATTTTTCCTGAAAAATCAACATCCTCGTTGCGAGTGTGTCGAGGATGTCTCGCTACGGACGCACGACTGTACGACATGCGCCACAACCGACTGATGGAGGCCTATTCCACACTACTGAGCAACGCTGTACAAGTGACAGATGACCTGCCACATTACTTATGCAGCTACTGCGCTGTACTGCTGCTCAAGTGTGACGCATTCAGAATTAAGTGCATTGATGCTCTTTTTGCATTCAGAAATACTCAAGTACACAAATTAGAATTATCCATAATAGATATACGGGAGCGATTTGTGCGGTCATGCATTGAAACGATGGATTGTATTGATGACGGGGATCAATTAACTCAACCAAATGATTATCATGATGTAATAAAAGTTGAAAAAGATGATATTACAGTTAATACTACTGGGGATAATGCTGAATGTAACTCCAAATCTATTATAGAAGCTGTTGTCAATGAAGAAACAACAGTATTAAATAAAACGTTGAAACAAGAAGTTCTTGGTCTAAAGTTAGATGATTCTGTAAAGTCAAAAGAAGATGACAGTGATTTTGAATTATCTAATAATGATACGAATAATTTTGAGTCTTTAGACACAGATGATGACAATCTTAAAGATTTAAAACTTAAATTAAAGCCAATAAAGAAACGTAaggttaaattaaaaacaaaaggcTTAGATTCTATAAAAGATGCAAAGAAAAAGAAACTTATTAAAGCAAACAGTAAAAAGGCTGAGTTTGCTGAGAACGTATGTGAAATATATAACGTAGATATTGTACAATTAAGTAAAGAAGAACAAATTAAAGAAATTGAAGATAGAAAAGATTTGGATAATTACAAATTGGCGAATTTCAAATGTAATATATGTTACAAAGGATTCATTATTGAAGAAACATATAATAATCATATGTTGATTCATGATGatATCAGCGGCAAATACGTGTGTGAAATTTGTCAATATCACttcatgagtaaaataaagctTGGATTTCACAAAGTTAATCATAAAAAGAAATACACGTGCAAGGACTGTGGTGTTGTCACCAAATATCTTCACAAAGTGAAGGAACATCATAAATGGCACGGAGGAACTAAATACAAATGCAAACATTGCGAAAAGGAGTTCGTGAGCACTTCTAACTACTACGGCCACCTGAAGATAAATCATCCGACCAGTGACGAGCTGGTCCGCTGTGAGATCTGTGGAGACGCATTCTATGGACGTTCGGGACTTAACTTTCATGAGAAGAAGGCACACAAAGAGATGAGATCACCGGAGTATCGTTGTTCAGGTTGCGAAACTCAGTTCTACTGCTTGAAAGCATTAAAGGTGCATCAAGGAACCGACGGACTGTGCGACCCGCGGGCTAACACATGTTTGCGCTGCGGTATATCGTTTGAGACTGAAGAACTGCTGAAGGAACATGAGATAGAGCAACGGAAACCGCGTGGTGTGTTCGAATGCATTCAATGTAATAAGAGTTTCAAAAGTTTCCAAAAATACAACTGGCACATGAAGTACACAAATGTACACTCGCCCTCGTACACTCCCCGGGCGCCTGAACTGAATAATAAGAATATTATTTGCGAGATTTGTGGTAAGGTTGTGAAGAATAACGGTCTTCTCAAAGTGCATCATCGGTTAAAACACACAAATGAAAGACCTTTTCAATGCAATGAATGCCCGAAAAACTTCCAGAGTGCTGTCAATTTGCAGGTCCACATGCGAACACACACCGGCGAGCGTCCGTTCCAATGCCTCAATTGTCCAAAAGcatttaaaacaatacaaaatcTAATCCGACACAATCTAGTGCACTCAGGGGAGCGTCCTCACTCGTGTGATGTGTGTGGAAAGACCTTTAAAACTACAAGTGATGCAAAAACTCATGTGAAGACAGTTCACATGAAGATACCTATGCCTCCGAGAACACGACGGAGGAATAAAAAAACTGaatgttaa
Protein Sequence: MPRIFPEKSTSSLRVCRGCLATDARLYDMRHNRLMEAYSTLLSNAVQVTDDLPHYLCSYCAVLLLKCDAFRIKCIDALFAFRNTQVHKLELSIIDIRERFVRSCIETMDCIDDGDQLTQPNDYHDVIKVEKDDITVNTTGDNAECNSKSIIEAVVNEETTVLNKTLKQEVLGLKLDDSVKSKEDDSDFELSNNDTNNFESLDTDDDNLKDLKLKLKPIKKRKVKLKTKGLDSIKDAKKKKLIKANSKKAEFAENVCEIYNVDIVQLSKEEQIKEIEDRKDLDNYKLANFKCNICYKGFIIEETYNNHMLIHDDISGKYVCEICQYHFMSKIKLGFHKVNHKKKYTCKDCGVVTKYLHKVKEHHKWHGGTKYKCKHCEKEFVSTSNYYGHLKINHPTSDELVRCEICGDAFYGRSGLNFHEKKAHKEMRSPEYRCSGCETQFYCLKALKVHQGTDGLCDPRANTCLRCGISFETEELLKEHEIEQRKPRGVFECIQCNKSFKSFQKYNWHMKYTNVHSPSYTPRAPELNNKNIICEICGKVVKNNGLLKVHHRLKHTNERPFQCNECPKNFQSAVNLQVHMRTHTGERPFQCLNCPKAFKTIQNLIRHNLVHSGERPHSCDVCGKTFKTTSDAKTHVKTVHMKIPMPPRTRRRNKKTEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00007416;
90% Identity: -
80% Identity: -