Prid018849.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596259.1:2247193-2261260[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 1.9 9.9 3.1 1 23 300 322 300 322 0.96 2 12 0.00015 0.011 16.9 0.9 2 23 330 351 329 351 0.94 3 12 0.092 7.1 8.1 1.4 1 23 355 377 355 377 0.97 4 12 0.00097 0.075 14.3 2.5 1 23 382 405 382 405 0.98 5 12 0.0072 0.56 11.6 0.2 1 23 409 432 409 432 0.94 6 12 0.021 1.6 10.2 0.1 2 21 450 469 450 474 0.92 7 12 3.8e-05 0.003 18.8 1.8 3 23 484 505 484 505 0.98 8 12 0.021 1.6 10.1 0.5 2 23 525 547 525 547 0.97 9 12 1.2e-05 0.00091 20.4 0.5 1 23 558 580 558 580 0.98 10 12 5.4e-06 0.00042 21.4 1.7 1 23 586 608 586 608 0.99 11 12 2.2 1.7e+02 3.8 5.4 1 21 614 634 614 636 0.93 12 12 3.9e-05 0.003 18.8 0.2 1 23 642 665 642 665 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAGGTGAAAGCGTGTCGAATATGTTTAATAATGGACGTGAGGATGTATGATTTGAGGTCGTATCCCTTGGATACGTACTTTGAAGAGATAATCGGCAATAGCACTCTAAGCACAATGGAAATACCCATCTATGCATGCAGCGAGTGTGCAGTATTGGTACAGAAGTATTACTTGTTCAAGGAGAAGTGTCTGCGAGGCCAGTCCACTCTGTATGGCATGCTTCATACTCCTGGGAAGATTACatcaaattcaataaaaaatattgacagGCAGTTCCTAGACCTAACATCACATCTCACCATAAATGAAACATCAGACAACAACTTTATCACCTATGTGTACAATGAAGATGAACAAGGCATCAAGTCTGAACCCGAAGATGATAGGATAACCAAGTCAGATTTAGAAATCACATTTATAAAGGAGGAGGAGGATTGCTTTGATGACTTCCCAGTTTTAGCCAgtagtgatgatgatgaaccactATCGGTCCATAAGAGTAATAAGGAAGTAAAGGGAAAGAAGAAAGataagaaaaagaaagaaaagaagaatAAAGATTTGGTAGAGAGGGTGAAAGACCGTGATAAAGGGCAAGTTTTAGTGAAAACACCAAAAGAGTCGTCAGCATTAGAAAATGTACCATCTGGATCTGAAATAGAACCCAGACCAGAATTAAATGAACTAACAATACGCAAACGAGGCCGCCCAAAGAAGACTGACAAGCCAATAGAACCAAAAGCGAAAATACGCAGGACAAATAACACAGGGGGCGTAGTTTCTGATGAAATTGATCTGGAGGAGTATGTTACTGTTGTTAAGTTATCGCTAGAGGAACAGATGGACGAGATCACGAAGCGCAAAGACTCGTCAAACTACTTGAACGCGCCGTTTCAATGCAACCTTTGCTTTAAAGGTTTTATAGACACACACGCGTGGAAACACCATGTCGGGAAACATGACGTGAGCGCGGGTGATATAGAATGTCCCGTTTGTAAATTCAGATTCAAAACAAAACGGACCCTTCAGAAACACGCCGCCAACCACGAAAAGAAATACGCATGCAAGTCGTGCTCCTATGTGTCGAAAACTACAACCCAAGCAAAACAACATCAGCGGTGGCACAAAGGTGTTACGTACAAATGTCAGCATTGTGATGAAGTCTCCACTAAATGGACGTCGTACCTGAGTCACGTGCGCATGAAGCACCCGTCGGAGTTCATCTGCGGCGCGTGCGGCTACTCGTTCGTGAGCAAGCTCGGCCTCACCATGCACCGGACCATGATGCACAAGGACCTGACAGAAAAGACAGACGATGAAAACGACAAAGAAAAAGGACCATATTGTGAAGAATGTGACGTTAAGTTCATATCAGTGGAGGCGTGGAAGCGACACATGGTGACCTCAGTCAAACACATACAGAGCACGGACTTTAACAAAGGTTGCCGTGTGTGTGGTGAGACGTTTAAGAACAGCGAAGAGTTGCGCGTCCACCACCGTAAGGAACACGCCAAGAAACGCCCTAAGAATTACGGCAAGAAACCGACCAACACCGCCTGGCCTGCAAAGTGTGAACATTGTGGTGAGGAGATCCCGAACGCGCGTCAGTACTGGACGCACTTCCGACGCGCTCACCCAGATAAGGACTACCCCATACAGAAGAACTACATCTGTGACATATGCGGGAAGAGCTTCCGGGGCAACGCATTCCTGGTGTACCACAAACGCACGCACTTCACGGAGCGCGCGTACAAATGCGAACAGTGTCCCAAGGCGTTCTTCAACCGCACCAACCTGCAGATGCACGAGAAGACGCACTCCGACACGCGGCCCTACCCCTGCTCCGTCTGCTTCAAGGCCTTCAAGTGTAAGGGGGCCCTAGATAGGCACTTTAGGTGTCACACGGGCGTCAAACCGTACGAATGCGAGGTATGCGGCAAAGCGTTCGGTCAATCTAACAGTCGGAACCTGCACTTAAGAACCGTACATCTGAAACAACCCGCGCCCTACATCAGTCGGAGTAGACTCGAGAGGCGGAACAAGTCGCACCCTCCCAAGGAACAACCTGCACATCAGTTTATATATCAGTGA
- Protein Sequence
- MEEVKACRICLIMDVRMYDLRSYPLDTYFEEIIGNSTLSTMEIPIYACSECAVLVQKYYLFKEKCLRGQSTLYGMLHTPGKITSNSIKNIDRQFLDLTSHLTINETSDNNFITYVYNEDEQGIKSEPEDDRITKSDLEITFIKEEEDCFDDFPVLASSDDDEPLSVHKSNKEVKGKKKDKKKKEKKNKDLVERVKDRDKGQVLVKTPKESSALENVPSGSEIEPRPELNELTIRKRGRPKKTDKPIEPKAKIRRTNNTGGVVSDEIDLEEYVTVVKLSLEEQMDEITKRKDSSNYLNAPFQCNLCFKGFIDTHAWKHHVGKHDVSAGDIECPVCKFRFKTKRTLQKHAANHEKKYACKSCSYVSKTTTQAKQHQRWHKGVTYKCQHCDEVSTKWTSYLSHVRMKHPSEFICGACGYSFVSKLGLTMHRTMMHKDLTEKTDDENDKEKGPYCEECDVKFISVEAWKRHMVTSVKHIQSTDFNKGCRVCGETFKNSEELRVHHRKEHAKKRPKNYGKKPTNTAWPAKCEHCGEEIPNARQYWTHFRRAHPDKDYPIQKNYICDICGKSFRGNAFLVYHKRTHFTERAYKCEQCPKAFFNRTNLQMHEKTHSDTRPYPCSVCFKAFKCKGALDRHFRCHTGVKPYECEVCGKAFGQSNSRNLHLRTVHLKQPAPYISRSRLERRNKSHPPKEQPAHQFIYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416153;
- 90% Identity
- -
- 80% Identity
- -