Prid001504.2
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- CATOBL010000353.1:67313-71996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.023 1.8 10.0 2.4 3 23 36 56 34 56 0.96 2 14 0.00038 0.029 15.6 3.5 1 23 94 117 94 117 0.98 3 14 1.8e-05 0.0014 19.8 1.2 2 23 120 141 119 141 0.97 4 14 0.00018 0.014 16.7 0.1 1 23 177 199 177 199 0.97 5 14 0.18 14 7.2 1.1 3 23 229 250 228 250 0.96 6 14 0.32 25 6.4 2.4 1 19 257 275 257 277 0.82 7 14 2.2e-05 0.0017 19.5 0.1 1 23 285 308 285 308 0.92 8 14 0.0004 0.031 15.6 0.6 1 23 317 340 317 340 0.97 9 14 0.00012 0.0094 17.2 0.1 2 23 346 369 345 369 0.97 10 14 0.19 15 7.1 2.2 2 23 376 397 375 397 0.95 11 14 0.0012 0.093 14.1 1.0 1 20 402 421 402 424 0.95 12 14 0.0012 0.095 14.0 1.8 1 23 430 452 430 452 0.97 13 14 7.5e-05 0.0058 17.8 1.6 1 23 458 480 458 480 0.96 14 14 0.0001 0.0079 17.4 4.1 1 23 486 509 486 509 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCTCCCTCCCTCATGGACCCCGTCGGAGCGCCCTACCCGGACCTGAATAATACCCCGGGCCTGAAACGTACCACTATTGATATAGTCGGTGGTATATTTTGTAACATTTGCCATTCAACATTTGCGAATAAGAAAGAATACGACAGTCATTACTTGAAGCACAATCCAGGCAATGCAGAGATCATTTACACATGCGTTGCTTGCCATAAGGAGATAGTGGGCTACCCCAGCTTCCGTGGACACTGCTACCTCAACCATGTCACGAAAGATAAATTCAAATGTGTACACTGCAACAAGGCATACTCAAAATGTTCAGTACTCGAAAGCCATATCAATACCGTACACAAAATCAGATGCAAAAAATGCAAGAAAcagtTCTCATCAAATACCGAATTGCAAGTCCATCTTCTGATTCACAAGAACGAAAAGAACTCTCCGCCTTACGAATGTAGCCTGTGTTGCAAGAGTATAGAAAGCATGGATATGTGCGAGTTGCATATTGAAGAGCACCGCAGCAACACATACCCATGTCCAATATGTACCATGACATTCACAGATAAAAATGAAGCCACTTCACACCTTTCCATTCATTTTGGCAACGTACTTACTGACTATGATTTCATAGAGCCGAAGATAGCAAAGGAAGACTGCTCCATAGACATACTCGGTGGCATATTGTGCTGTTACTGTGACAACTTGTTCAAAAACCGAGCAGAGTTTGATGCGCACATTTCTAGTGAACACTTCGGCAAAGATATTGTGTACTCATGTAATATTTGCGGGAAGAAATACGAGAAATATGTAATGTTTGGCAACCATTGCTACTTTCATATCGCTAAAGATCGCTTTGAATGTGATGAATGTGACAAGTCCTTCCCTCGTCTTTCGCTGCTGGTAGTACATACAGAGGCTTTCCACTCGGGCAGTCCTGCAGACAAGCCGTTCACCTGCGTGCAATGTGACCACGCATTCAAGACCGCACCTCGCTTGCGGGAACATCTGCGCATTGTTCATGATCTGCATACCATCAAGTGTCCAGCATCGGGGTGTGACATGACATTCGAATCGCCAAAAGATTTGATCCTCCACCAGAGGAATCACAAAATGGTGGACAATGTATCTTGTCGTCATTGCAGCCTGCCATTCACGACTCTATCAGCCTGCGAGAGACATCTAGACGTGCACAGAAAATCATCATACATATGCCCTATTTGCAACAAAGAGTACAGAGAAAAATTCACCCTGCTTAAACACATACCACATCATTTCGAATCCGTGCTGCATATTTGCAAAATCTGCGGTAAAGCTTACAACCTCAGATCCCGTCTGGTACAACACTCTAAGACGCATTCAGACTTGAGGTCTCATATATGCAGCCTGTGCGGCAAAGGGTTTATGAAACCACACGAGTTACAGCAACATCTAAACGTACATACAGGCCTGAAGCCGTACAAATGTATGCATTGTCCGAAGACATTCGCCAGCCACCCTAATTGGTCGAAGCATTTACGCCGGATGCATAATGTCGATAAAGACCTGATTAAAACGCCACAGAATCAAGTTGAGGTAAAGAAAGATAATGTAAACGTTTTGAAAGATAATTTGCCGGATAATAATATGATTACAAATGCACAGAATCTGGTTGAAGCGAAGATAGAGTATTTGACAAATCATATGCCGGATAACAATGTTGTTAATAGTGATGTTGCGTCGATTATAGAGTCTGGTTTCGATTCGATGAGCTCTGAGATGTCGATGGGTACTTATCGGTTCGTAGAGTCGGATGAAAGCACAATGGACGGTATAGATCCCGTAGTAATACAGAAAGAGTGGCAGATATTAAACGAAAGTGTTAATTCTGCAGCTAACAATATTCTCGAATTGCCGAATCTGATTCAGATCGCCAACGCGACATTTGAAACTCATGACATGCCTCAGAATACATCGATCATGGAGCCAACGCCAACCTTCGAAACAGTTGGGTACCCGGCGGAGTACGGGCCCGACTTCATAAACCGAGGCATCGAGACCTCCTCGTTCAACGGGGCCTTGATCGACCTCGACGACCACATCCTACCACATATCGACCCGCTACTCACAATAAGAAACGAAGAAACGCCGACTAAAATGTACGTAGACACACTAAATAACGTTGATTTAGAAAACTACGGCCACAACGTAGTAACTAACACATACGAAATGCAAAATACTTGGGAACCGCCTATTATAACCAAGGTTTACCAAAACTACACATACCACGAGGAACTAGCAGAAGTTAATAGATTAGCCATTATGaatacagatattttttag
- Protein Sequence
- MASPSLMDPVGAPYPDLNNTPGLKRTTIDIVGGIFCNICHSTFANKKEYDSHYLKHNPGNAEIIYTCVACHKEIVGYPSFRGHCYLNHVTKDKFKCVHCNKAYSKCSVLESHINTVHKIRCKKCKKQFSSNTELQVHLLIHKNEKNSPPYECSLCCKSIESMDMCELHIEEHRSNTYPCPICTMTFTDKNEATSHLSIHFGNVLTDYDFIEPKIAKEDCSIDILGGILCCYCDNLFKNRAEFDAHISSEHFGKDIVYSCNICGKKYEKYVMFGNHCYFHIAKDRFECDECDKSFPRLSLLVVHTEAFHSGSPADKPFTCVQCDHAFKTAPRLREHLRIVHDLHTIKCPASGCDMTFESPKDLILHQRNHKMVDNVSCRHCSLPFTTLSACERHLDVHRKSSYICPICNKEYREKFTLLKHIPHHFESVLHICKICGKAYNLRSRLVQHSKTHSDLRSHICSLCGKGFMKPHELQQHLNVHTGLKPYKCMHCPKTFASHPNWSKHLRRMHNVDKDLIKTPQNQVEVKKDNVNVLKDNLPDNNMITNAQNLVEAKIEYLTNHMPDNNVVNSDVASIIESGFDSMSSEMSMGTYRFVESDESTMDGIDPVVIQKEWQILNESVNSAANNILELPNLIQIANATFETHDMPQNTSIMEPTPTFETVGYPAEYGPDFINRGIETSSFNGALIDLDDHILPHIDPLLTIRNEETPTKMYVDTLNNVDLENYGHNVVTNTYEMQNTWEPPIITKVYQNYTYHEELAEVNRLAIMNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416122;
- 90% Identity
- iTF_00007363;
- 80% Identity
- -