Prid028355.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polyploca ridens
Gene Symbol
-
Assembly
GCA_951394255.1
Location
OX596271.1:5510482-5516504[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.014 1.1 10.7 0.3 1 23 95 118 95 118 0.93
2 25 0.32 24 6.4 0.0 2 23 145 167 144 167 0.94
3 25 3.2 2.5e+02 3.3 0.5 9 23 197 211 190 211 0.87
4 25 0.46 36 5.9 0.0 1 23 215 237 215 237 0.91
5 25 0.016 1.2 10.5 1.7 1 23 242 265 242 265 0.97
6 25 0.15 12 7.5 1.4 2 23 273 295 272 295 0.91
7 25 0.00013 0.0098 17.1 0.8 2 23 303 325 302 325 0.96
8 25 0.019 1.4 10.3 2.6 1 23 331 353 331 353 0.97
9 25 2.7e-05 0.0021 19.3 1.4 1 23 359 381 359 381 0.99
10 25 0.11 8.9 7.8 3.0 1 13 387 399 387 402 0.91
11 25 0.0064 0.49 11.8 0.2 1 23 475 498 475 498 0.92
12 25 0.58 45 5.6 0.3 2 23 525 547 524 547 0.95
13 25 2.5 2e+02 3.6 4.2 2 23 570 591 569 591 0.96
14 25 0.049 3.8 9.0 1.1 1 19 595 613 595 617 0.95
15 25 0.55 43 5.7 0.7 1 13 622 634 622 638 0.90
16 25 0.099 7.7 8.0 0.9 1 23 703 726 703 726 0.93
17 25 1.2 93 4.6 0.2 2 23 753 775 752 775 0.95
18 25 0.32 25 6.4 3.9 2 23 798 819 797 819 0.96
19 25 0.011 0.81 11.1 0.0 1 23 823 845 823 845 0.94
20 25 0.26 20 6.7 2.3 3 23 852 873 850 873 0.95
21 25 0.043 3.3 9.2 0.6 2 23 881 903 881 903 0.91
22 25 0.00098 0.076 14.3 1.1 2 23 911 933 911 933 0.96
23 25 0.0013 0.1 14.0 1.6 1 23 939 961 939 961 0.96
24 25 3.3e-06 0.00026 22.1 1.4 1 23 967 989 967 989 0.99
25 25 0.00011 0.0086 17.3 4.1 1 23 995 1018 995 1018 0.98

Sequence Information

Coding Sequence
ATGTATGCTGCTCCAATATCTGCAGTTCTGTTCATCAACGTGCCCATTGAGGTGGAAATGGGCTTCGTCGGAAAACAAGATATTGTCAGTGTCCAACGTAAGGCAATCGTCGCTAACAGTGACAAGAAAGGATTAAACACCAAACCACTGAAAAGGATTTTAGTGTACGGCGGTCGAATACAATTAAGGCAGATAAGCGAATTGGATAAACATCGCTCCAACATACGGATTGTACTGCAGTGCTCGAACGCGACGCCCATACGGTGTCACGGCGGTATCGGGTACGCGTGCTGTTTCTGCGCCGAACAGTTCCCAGACCCCGCAGACCTCAAGCGACACACCATACAAGCGCACGATGATAAAGCGAAACTCAAATTCATGCAAGGGAAGATGATGTACGATTATCTCGTTAAACTAGACATCACGTCGTTGGTTTGCACCATTTGCAATACCAGCATTGATGCATTAGACCAACTCATCGAGCACCTTATAAAATTACATAGAAAACCATTTTACACGGATATACAGAATCACATCCTCTCCttcaaatttgacaatgatGTGATGCGCTGTATTTTCTGTATGAACGTATTCAATAAGTTCAAAGCGCTACAGGAACATATGAATGTTCATTACAGGAACTACATATGCGACGTGTGCGACGCTGGTTTTGTCAACCGTAACATCCTGTCGAGCCACACAGAAGCCCATAAAATTGGCACGTTCAAATGTGATCAGTGTCCGAAAATATTTGACACAATGCGTAAGAAGAAATCCCACGAGAGATCCGTACACAACCatttaaaaatgtttaacaaatgTGGATACTGCAACCAGAAATTTAAAGATTATAGGCAGAAGAATGGTCATTTAGTAAAAGTGCACGGTGTTCAATTGAGTGCGTTGAAATGTCAAGCTTGTGACAAGACATTTGTGAGTAAAACAGCTTTGACGGTACACACAAAGAGAGATCACTTGATGGAAAGGAGGCACAAGTGTACCCAATGTGACATGAGATTCTTCGCAACGAATGAGCTAAAAATCCATATGGTGAAACACACTGGCGTTCGCGAGTTTAAGTGTGACGTATGCCTGAAGTCTTACGGGAGGAGGAAAACTTTGAGAGAGCATATGCGTATACATGAGAATGACAGGCGATTTAAATGCGAGCACTGCGGGCAGACGTTTGTGCAGAAATGTCTAAAAGAAATTATTATAAGCAAAGCAATAAAAGTCAAAGTAAAGAAACATATAGAGACTCAACATAAAATACAAGATTCTATTAAACATAATGCCGCACAAGTAATAACGCCCGAAGCGATACAGAGTAATAAACAAGAATTAATGAAATACCGTCATAACAACAGGCAAGTTCTGAAGTTCTCGAACGCTACGCCGATCAGGCGACAAGACGGCATCGCGTACATATGTGGCTATTGCGATGAGAAGTATCAGCTGGCAGCAAACCTCAAAAAACACACAACTGAGCCGCACAAAGACGTCAACTCTGCACTGTTCATGAAGGGAACGGACAGGCAGAAGTTTTATGTAAACTTAGACATCACACAGCTTCACTGCAAACTCTGCGAAGTAGAGATGAGTTCGCTGGAAAATCTTATAGAACATCTGAACAAAGCACATGAAAAGAACATGCATAATGACATAAAGAACCGAATGATGGCTtttaaatttgacagcgatacaTTGAAGTGCTGCATGTGTTCTAGCGCATATGACAGATTCAAAATGTTGCTAGTGCATATGCATTCGCATTACAGCAATTACATTTGCGAAACATGCGATGCTGGTTTTATTAAtccttattttttgtttaaacatgCGGACTGCCACAAATCTAGGAACTACGAATGCGACTTCTGCCCAGAAGTATTCACTACTTACGGTAAACAGCAAATCAGTTCCATCAAACTTGAGCTCGAAGAATGCGAGGGAAGCGGAAGTGAAATATACGATGATAGCTTCAGACTGAAAGAAGGAACGAGACAAAAAACTCCGCGAACAGAGCTAGTGAAACATCGGAGTAATATAAGAGAGATATTGACCAATTCGAATGCAACACCTATCCGACGCTATGGAGGCATTGGGTACACCTGTTGTTACTGCACAGACCAGTTCCCGGAGCCAGGAGATCTAAAGAAGCACACGCTAGACGCCCACAATGACGTCACGCAAGCCAACTTCATGAAAAGTATGAACATGTCCGAATACGTAATCAAATTGGACATAACGGCTCTCCGCTGTAAAATCTGCCAAAACGACATTGATACGTTGGAACAGATGATGCAACATTTGAAAGTCGACCATGAGAAGAAGATATTTACCGATATCAAAAATCACATAATGCCGTTCAAATTCGGTGAGGAAATATTAAGATGTATGTTTTGCTCGAGCTCTTTCAACAAATACAGAATGCTACTGAAGCACATGCACATACACTACAGAAATTACATCTGCGATATTTGCGACGTCGGTTTCATTAACCGCAACGGTCTTGCGCAGCATTCGGAGAACCATAGGACAGGATCTTTCGGTTGTGATTATTGTGCCAAAGTTTTTACAACGCACGTGAAAAAGAAACTGCACGAAAGAAATAGTCATACCCATGTAGACTTGTTGAACAGATGTGGATATTGCAACGAGACGTTCAAAGACTACAGGAAGAAGGAGGCTCATTTAGCAGAGACGCATGGAGTGCGGATGCAGACGGCAAAGTGCCAAGCTTGCGACAAAACCTTCAGTAACCGCAAGGTGTTGAACATTCACGTAAAGCGGGACCATTTGATGGAGAGACCACACAGTTGTCCGGAGTGTGATATGAAGTTCTTTTCGACTACGGGCTTGAAGAACCATATTGTGAAACACACGGGTTTGCGGGCATTTCAGTGTGAAGTTTGCTTGAAGTCGTTTGGGAGGAAGAAGACTTTGAACTCTCATATGAGGATACACGATGAGGACAAACGGTACAAATGCGAGCACTGCGGGCAGGCATTCGTGCAGAAGTGCAGTTGGAGAGGACATATGCGTTCCAAACATGGGGAAATTGTTTAA
Protein Sequence
MYAAPISAVLFINVPIEVEMGFVGKQDIVSVQRKAIVANSDKKGLNTKPLKRILVYGGRIQLRQISELDKHRSNIRIVLQCSNATPIRCHGGIGYACCFCAEQFPDPADLKRHTIQAHDDKAKLKFMQGKMMYDYLVKLDITSLVCTICNTSIDALDQLIEHLIKLHRKPFYTDIQNHILSFKFDNDVMRCIFCMNVFNKFKALQEHMNVHYRNYICDVCDAGFVNRNILSSHTEAHKIGTFKCDQCPKIFDTMRKKKSHERSVHNHLKMFNKCGYCNQKFKDYRQKNGHLVKVHGVQLSALKCQACDKTFVSKTALTVHTKRDHLMERRHKCTQCDMRFFATNELKIHMVKHTGVREFKCDVCLKSYGRRKTLREHMRIHENDRRFKCEHCGQTFVQKCLKEIIISKAIKVKVKKHIETQHKIQDSIKHNAAQVITPEAIQSNKQELMKYRHNNRQVLKFSNATPIRRQDGIAYICGYCDEKYQLAANLKKHTTEPHKDVNSALFMKGTDRQKFYVNLDITQLHCKLCEVEMSSLENLIEHLNKAHEKNMHNDIKNRMMAFKFDSDTLKCCMCSSAYDRFKMLLVHMHSHYSNYICETCDAGFINPYFLFKHADCHKSRNYECDFCPEVFTTYGKQQISSIKLELEECEGSGSEIYDDSFRLKEGTRQKTPRTELVKHRSNIREILTNSNATPIRRYGGIGYTCCYCTDQFPEPGDLKKHTLDAHNDVTQANFMKSMNMSEYVIKLDITALRCKICQNDIDTLEQMMQHLKVDHEKKIFTDIKNHIMPFKFGEEILRCMFCSSSFNKYRMLLKHMHIHYRNYICDICDVGFINRNGLAQHSENHRTGSFGCDYCAKVFTTHVKKKLHERNSHTHVDLLNRCGYCNETFKDYRKKEAHLAETHGVRMQTAKCQACDKTFSNRKVLNIHVKRDHLMERPHSCPECDMKFFSTTGLKNHIVKHTGLRAFQCEVCLKSFGRKKTLNSHMRIHDEDKRYKCEHCGQAFVQKCSWRGHMRSKHGEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-