Prid028336.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596271.1:5443906-5448094[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 1.9 9.9 0.2 1 23 113 136 113 136 0.90 2 19 3.1 2.4e+02 3.3 0.9 2 21 163 182 162 185 0.92 3 19 0.048 3.7 9.0 1.4 1 23 208 230 208 230 0.98 4 19 0.015 1.2 10.6 0.1 1 23 234 256 234 256 0.95 5 19 1.4 1.1e+02 4.4 1.2 1 23 261 284 261 284 0.93 6 19 1.6 1.3e+02 4.2 4.5 1 21 289 309 289 312 0.82 7 19 0.00026 0.02 16.2 2.7 3 23 321 342 321 342 0.95 8 19 0.0039 0.3 12.5 2.5 1 23 348 370 348 370 0.97 9 19 3.7e-07 2.9e-05 25.1 1.0 1 23 376 398 376 398 0.98 10 19 1.5 1.2e+02 4.3 1.6 1 23 479 502 479 502 0.89 11 19 6.1 4.8e+02 2.4 0.0 2 23 529 551 528 551 0.88 12 19 0.0093 0.72 11.3 0.2 2 23 574 595 573 595 0.96 13 19 0.00036 0.028 15.7 0.2 1 23 599 621 599 621 0.96 14 19 2.8e-06 0.00022 22.4 2.1 1 23 626 649 626 649 0.94 15 19 0.063 4.9 8.7 0.9 2 23 657 679 656 679 0.92 16 19 0.00069 0.054 14.8 3.6 2 23 687 709 686 709 0.95 17 19 0.0046 0.35 12.2 2.2 1 23 715 737 715 737 0.96 18 19 6.7e-05 0.0052 18.0 1.0 1 23 743 765 743 765 0.99 19 19 0.0012 0.094 14.0 4.1 1 23 771 794 771 794 0.98
Sequence Information
- Coding Sequence
- ATGAAATCTGTCCATTATCTTATTCAAGCTAACGTCGATCCGTCAATTCTTATTGCTGAAGATGTTGGTGTCTTAGACATCGGTGTCCAACGCCAACCAAAAGCTTCCGTCATCAATATTTTAAAGAGACTCAATGAAATCAACGTGACCGTGAAAAGGAGTGGTTCTATGCGAGATGGCTCTCAATATCAACACGTGAAGACTATGTTGAGTAAGAAATCGACTGCCGAGTCTTCTGTTAAGGTAACAGAACAAGTTTGGAAACATCGGCATAACATCAGGCGAATACTCTTGTATTCCAACGCTACTCCGATCCGTCGATACGAGGATGCAGGATTTCTTTGTAGCTTCTGCAATGCACAATATACAGACCCAGCCACCTTAAAAAGTCACACCATCGAAGAACACACCGAAGCAACCAAAGCCAAGTTCATGCAAAACGTAGGAATGTCATCGTTTTTAGTCAAACTTGATATAACCGATCTAGAATGCAATATTTGTTATCATAGTATCGACTCACTCCAGGACCTCATCGATCACCTTAATTGCGACCATGGAAAATCTATTTTTACAGACATAAACAATCATATCCTTCCGTTGAAATTTGAAGACGGCGTTTTATTTAAATGCGTCTTGTGCAATAATAATCTCAACACATTCAAATCATTGCAAGAACATATGAGCTCCCACTACAGGAATTATGTCTGCAACATATGCGGAGCTGGGTTCGTCACCAGACAGATGATCAGGGGACATAATGAAACTCACATGACGGGTACCTTCAAATGCACGTTCTGCCCCAACATATATGACACCCCCAGAAAGAAGAAATCTCACGAGAGTAGTGTCCATGTAAAAATGTTACACAAATGTGGTCATTGCAATGAAAAATTCAATAGTTATGACAGGAAATTGAAGCATTTTGCCAACGAGCACGGGATACCTATGCCAAAAATCGGGTGTCAAGCGTGCGGCAAAACGTTTCGGAAGCAGTCGCTTCTGACGAGTCACATTCATAAAGATCATCTGATGGAGAAGCGACATATGTGTACTGAATGCGATATGGGATTCTTCTCGTTGAATAGGCTGAAAGATCACATGCAAAAGCACTTCGGCCTGAAGAACTACAACTGTGAGATCTGTTCGAAGTCATTTGTGAGAAAGAAGAGTTTGAGGGAACATATACGGATTCATATGAACGACAAGAGATTCAAGTGTTGTACTATAAAAGACGAAAAAGTTGAAATCACTGTGGATGAATTAGTATCTGCGCCTCAACCAACGCCGAATACAGTTATTGAATCCAAGACTAAAGCAAAGGGGAAGGGTAGCAAAACAAAAGGCGTACCAGAACTGCATAAGCATAGAACAAATATTGAAACTATACTGGAGTGCTCGAATGCGACGCCGATAAAAAACTGCGGAGACATTGGGTACGCGTGCTGTTTCTGCTCAGAATCGTACCAAATAGCGACGGACCTAAAGCGGCACAATTTAGAAACACACGATAATAAAACCAGAAAAACATTAACTAAGGGTACGTTGATGTACAACTATCTAGTCAGATTGGATGTCACTTCTCTGCGATGCATTATATGTGACACCAACATAGTGACATTGGAACTACTAACCGACCATCTGATCGAAGTGCACGGAAAGATCTTTCACAAGGATATAAAGAGTCATATCTTGCCGTTCAGGTTCGATGACCAAGAGTTACGGTGCGCTGTTTGCCAGACCGCATTCAATAAATTCAGAGCATTACTTGAACATATGGCAATGCACTATAGGAATTTTATTTGCAATGTTTGTGACTCCGGATTTGTGAACCGATCCAGTCTATACCGACATGCTTTGGTTCACGAATCTGGCAGTTTCAAATGCGATAAGTGCCCAAAAGTGTTTAAATCACAGCGAAATTTGAAAACCCACGAAAAAGGTACACATCTCTTAGGCCACATGCTGAAGAAGTGTGGCGTCTGCAACGAGAAATTTAATGATTATCGAAAGAAACAACGTCACTTGGCGGAGGTGCACGGAGTCAAACAAAAAGAGAAAAAGTGTCTGGCTTGCGACAAAACCTTTGAATATCAATCTGATTTAACGCACCATACAAAGAAATACCATTTGATGGAGAAGCGGCACAAATGCCTGCAATGTGATATGAAGTTCTACGATACTAAAGAGCTAAAGGCTCACGTGGTGAAACACACTGGTGCTCGCGAGTTCCAGTGTGACGTGTGCCTGAAGTCTTATGGAAGGAGGAAGACTTTGAGAGAGCACTTGAGGATACATGAGAATGATAGGCGATTCAAGTGTAGGCACTGCGGTCAAGCGTTCATTCAGAAGTGCAGCTGGGTGGGGCACATGCGCTCCAAGCACGAGGACATGTTGTAA
- Protein Sequence
- MKSVHYLIQANVDPSILIAEDVGVLDIGVQRQPKASVINILKRLNEINVTVKRSGSMRDGSQYQHVKTMLSKKSTAESSVKVTEQVWKHRHNIRRILLYSNATPIRRYEDAGFLCSFCNAQYTDPATLKSHTIEEHTEATKAKFMQNVGMSSFLVKLDITDLECNICYHSIDSLQDLIDHLNCDHGKSIFTDINNHILPLKFEDGVLFKCVLCNNNLNTFKSLQEHMSSHYRNYVCNICGAGFVTRQMIRGHNETHMTGTFKCTFCPNIYDTPRKKKSHESSVHVKMLHKCGHCNEKFNSYDRKLKHFANEHGIPMPKIGCQACGKTFRKQSLLTSHIHKDHLMEKRHMCTECDMGFFSLNRLKDHMQKHFGLKNYNCEICSKSFVRKKSLREHIRIHMNDKRFKCCTIKDEKVEITVDELVSAPQPTPNTVIESKTKAKGKGSKTKGVPELHKHRTNIETILECSNATPIKNCGDIGYACCFCSESYQIATDLKRHNLETHDNKTRKTLTKGTLMYNYLVRLDVTSLRCIICDTNIVTLELLTDHLIEVHGKIFHKDIKSHILPFRFDDQELRCAVCQTAFNKFRALLEHMAMHYRNFICNVCDSGFVNRSSLYRHALVHESGSFKCDKCPKVFKSQRNLKTHEKGTHLLGHMLKKCGVCNEKFNDYRKKQRHLAEVHGVKQKEKKCLACDKTFEYQSDLTHHTKKYHLMEKRHKCLQCDMKFYDTKELKAHVVKHTGAREFQCDVCLKSYGRRKTLREHLRIHENDRRFKCRHCGQAFIQKCSWVGHMRSKHEDML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -