Prid028411.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- Zfy1
- Assembly
- GCA_951394255.1
- Location
- OX596271.1:5915978-5919522[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0071 0.55 11.6 0.5 1 23 83 106 83 106 0.95 2 23 0.19 14 7.2 0.4 2 23 133 154 132 154 0.96 3 23 2.4 1.8e+02 3.7 4.4 1 23 176 198 176 198 0.98 4 23 2.9e-06 0.00022 22.3 0.7 1 23 202 224 202 224 0.98 5 23 6.3 4.9e+02 2.4 0.5 1 20 229 248 229 252 0.72 6 23 0.22 17 7.0 0.3 1 23 258 281 258 281 0.86 7 23 0.17 13 7.3 0.7 1 14 288 301 288 304 0.90 8 23 0.47 36 5.9 0.1 1 23 352 374 352 374 0.92 9 23 2.8 2.2e+02 3.5 0.1 2 23 399 421 398 421 0.88 10 23 0.00044 0.034 15.4 1.0 1 23 443 465 443 465 0.99 11 23 9.7e-06 0.00075 20.6 0.7 1 23 469 491 469 491 0.98 12 23 0.099 7.6 8.0 0.3 1 21 496 516 496 519 0.88 13 23 0.15 12 7.4 3.8 1 23 525 548 525 548 0.95 14 23 0.12 8.9 7.8 0.2 1 23 604 626 604 626 0.96 15 23 6.2 4.8e+02 2.4 0.1 2 23 650 672 649 672 0.93 16 23 0.0011 0.083 14.2 2.1 1 23 694 716 694 716 0.97 17 23 0.0061 0.47 11.8 0.2 1 23 720 742 720 742 0.96 18 23 0.0029 0.23 12.8 0.8 1 23 749 772 749 772 0.98 19 23 0.04 3.1 9.3 1.6 1 23 778 801 778 801 0.96 20 23 0.036 2.8 9.4 1.9 1 23 807 830 807 830 0.96 21 23 0.0092 0.71 11.3 1.1 1 23 836 858 836 858 0.98 22 23 1e-06 7.8e-05 23.7 0.6 1 23 864 886 864 886 0.99 23 23 0.00015 0.012 16.9 5.1 1 23 892 914 892 915 0.96
Sequence Information
- Coding Sequence
- ATGAATTCAGTGAAACTAACTCTTAGAGGTACCGCTTATGATGCGGAAGGGAATGTAGGTGCGGTTAAACCAGTTAGAAAGTTAAAGGAAGTAGTAAGCGATCGTCAGATGCGAAGGCGTCGGCGCGCAAACAACGAACTGCCCGAAGTATCCGAAAAACGCATTTCAAAAACTATGATGCGACGAAACGCCATGACCCTTCTACAAAATTCGACTGCGTGGGCTTTTAGATGGTTCCACAGCTGTTTTTACTGTTCCTATTGCGATGCTAAGTTTGTAGACGTTGACCCTTTCCGCAATCATGTAAGAGATAAACATCTAAACGAAATGCCGACGAACAAAATATTCTCGAAACTGACCGAAAATAATATGGTCAAAATCGACATAGCCGATCTTAGTTGTAGAGTATGTAATAGTAATTTTAATGGCTTAGAATCTCTGAAGGGTCATTTAACGACCCACGGAACAGTGTTAAATAAGGATTTTAGCGATGGTGTGTTACCGTTCAGGCTCAATGAAAATGGATTTTACTGCCAAATATGCTACTCACACTTCTTAAACTTCTCCAAAATGAATGAACACATGAATACGCATTATCAGAACTACGtttgtgatgaatgtggaaaagCGTTTATATCTAAATCTCGTTTTAGAAAACATGTGCAGTCGCATGAAAAGGGAAACTTTCCATGTGGCGATTGTGGTGAAATTTTAGATACTAGAACAGCGAGAATGTGTCATAGAATGAGAGTGCATAGGAAAGGTGTGCGATACGCATGTCCTCGGTGTCCGGAAGTGTTTACAGCTTACCATACAAGAGTAAAACATCTAGTAAATGTTCACGCTCAGCAAAAGAAGGAGTATGACTGCAACGCATGCGGAAAAACTTTTGAAACTAGTTCAAAGCGAACAGACGTCGGAAAGCAAGGGTCTTCTTCAAACGCAGTAACAATAGTGTGGAAGAGGAAGCCGAAGCTAAATGAGGATAAAGCCAATGCTGCTTTTTTACTCGAGAATTCGAACGCGGTTGTATTTAGATGGAATCGAGGGAAGTTTATGTGTGCCTATTGTCCATTAATCTGCGCTAATGTTGCTGAATTACGATTGCATTCAGTCATTCACGATAAATTAGACGTCCTTGAGAAACCAGAAGTTAGTAACTCATTCCCTCTAAGGATAGATATTACTGAGCTTTCTTGTGGTATATGTAATGATATGATGAATAATCTAACTGATTTAAAAAGGCACTTAATAGATGTGCATTCGAAGAAAACAGATCCAAATTACACAGACGGTGTAATACCATTCGTGTTGACAGGAAAGGAGTATAAATGTGTTCATTGTGGAAAACTGTTTGTCGGTATTATGACGTTATTCGTTCACATGAATACGCACTATCAGAGTTATGTATGCCCTACATGTGGAAAAGGGTATTCAGGGCAGCACAAATTGCGAGCTCATCAATTAAGCCACGAAATTGGTCAATTTAAGTGTATGAAGTGTGATTTAGTATTTCCTAGTTATATTGAAAGAAAGAAGCATGCAACTGGAGCCCATGGAAGGAAGGAAAGACACCGCTGTCCAATTtgtaatgttcatttcgattcGTACCACGCACGACTACGTCATCTAGATAAAGCGCACGGTCAGAAAACTGAATATCGTTGTGCTTTATGCCCTTCTGTATTCGgATCCATCGAAAGCAAAATAAAATGGAGCCCGAAGCGCAAGTATAACGATCACAGAGATAATGCCGCTATTATCTTTGAATGTTCAAACGTCTGTCCGTTTCGATGGAAACGTGGCGCTTTCACTTGCGCCTTCTGCCCTTTTACCTTCGGTGATTTTAGTGGAGTAAGGGAACACGTGTTAAACCACCCAAATAGGATTGAAGCTTTGCGTATCGCTCGTCCCATCTCCAATATCAAAGTTGATGTAACAGATCTCAGATGTGAGCTCTGTCTCGAAACAATGAAGGATATTGAGAGCCTCGCTGATCATCTTATATCTAGCCACAACAAACGTATTAATAAAGAATATGATTTAGGAGTAATGCCGTTCTTGGTCGACGCCAATCAGTTCCATTGTACACAATGTGGGGAAACCTTCGAGCTATTTTCTAAATTGAATGCACATTTGAACCAACACTATCCAAATCATATTTGCTTCTTATGCGGTAAAGCATTTTCTATAGTTGGTAGACTCAAAGCGCACCTCCTTATACACGAACGTGGCGATCACCAGTACAAATGCACGAGATGTAATGATGTTTTCGCGACTAAAGTTATGAGGAACAATCACATTAGAACTGCTCACAAACCGGCTCCTAGGTACAGGTGTCCATATTGCCAAGATTCTTTCAAAAATTACGCCGACAGAGGCAAGCATTTGAAGCAATATCACGGCAATAAGGTTGAATATCCCTGTCATTTATGTCCAGCTGTTTTCGCCATGTGTAACCAGAGGACTAAGCATATAAAGCAGGTCCATATTAAACAGAAAACGTTCTCCTGTGCCATTTGTAGTTTCATGTTTGTCACCGCCGCTCAATTGAGGTGTCATATGATCAAGCATGGAGGCGAAAGAAAGTACCAATGTCAGGTGTGTAAGAAAGCGTACGCTCGACCCAAAACTTTGCGGGAACATATGAGAAtacataataatgacaagaGGTTTGTTTGCGAGTACTGTAATAATGCCTATGTCCAGAAATGCAGTCTTAAAAGCCACATGCGAACGCACCACCCCAACGCTGAACCGCTGAAGAAGATAGTCTTGTCTAACGCTTGCTGA
- Protein Sequence
- MNSVKLTLRGTAYDAEGNVGAVKPVRKLKEVVSDRQMRRRRRANNELPEVSEKRISKTMMRRNAMTLLQNSTAWAFRWFHSCFYCSYCDAKFVDVDPFRNHVRDKHLNEMPTNKIFSKLTENNMVKIDIADLSCRVCNSNFNGLESLKGHLTTHGTVLNKDFSDGVLPFRLNENGFYCQICYSHFLNFSKMNEHMNTHYQNYVCDECGKAFISKSRFRKHVQSHEKGNFPCGDCGEILDTRTARMCHRMRVHRKGVRYACPRCPEVFTAYHTRVKHLVNVHAQQKKEYDCNACGKTFETSSKRTDVGKQGSSSNAVTIVWKRKPKLNEDKANAAFLLENSNAVVFRWNRGKFMCAYCPLICANVAELRLHSVIHDKLDVLEKPEVSNSFPLRIDITELSCGICNDMMNNLTDLKRHLIDVHSKKTDPNYTDGVIPFVLTGKEYKCVHCGKLFVGIMTLFVHMNTHYQSYVCPTCGKGYSGQHKLRAHQLSHEIGQFKCMKCDLVFPSYIERKKHATGAHGRKERHRCPICNVHFDSYHARLRHLDKAHGQKTEYRCALCPSVFGSIESKIKWSPKRKYNDHRDNAAIIFECSNVCPFRWKRGAFTCAFCPFTFGDFSGVREHVLNHPNRIEALRIARPISNIKVDVTDLRCELCLETMKDIESLADHLISSHNKRINKEYDLGVMPFLVDANQFHCTQCGETFELFSKLNAHLNQHYPNHICFLCGKAFSIVGRLKAHLLIHERGDHQYKCTRCNDVFATKVMRNNHIRTAHKPAPRYRCPYCQDSFKNYADRGKHLKQYHGNKVEYPCHLCPAVFAMCNQRTKHIKQVHIKQKTFSCAICSFMFVTAAQLRCHMIKHGGERKYQCQVCKKAYARPKTLREHMRIHNNDKRFVCEYCNNAYVQKCSLKSHMRTHHPNAEPLKKIVLSNAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437317;
- 90% Identity
- -
- 80% Identity
- -