Prid028408.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596271.1:5904030-5910649[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.5 1.1e+02 4.4 0.1 1 20 73 92 73 94 0.92 2 20 1.1 82 4.8 0.0 2 23 122 143 122 143 0.95 3 20 0.35 27 6.3 0.2 2 23 166 187 165 187 0.97 4 20 0.0033 0.26 12.7 0.1 1 23 191 213 191 213 0.97 5 20 0.055 4.3 8.8 0.3 1 23 218 241 218 241 0.89 6 20 0.035 2.7 9.5 0.5 1 23 247 270 247 270 0.86 7 20 0.11 8.6 7.9 1.0 1 21 277 297 277 300 0.82 8 20 0.00011 0.0086 17.3 0.9 1 23 307 329 307 329 0.98 9 20 3e-05 0.0024 19.1 1.0 1 23 335 357 335 357 0.99 10 20 0.00071 0.055 14.8 0.3 3 23 362 383 360 383 0.96 11 20 0.025 2 9.9 0.3 1 20 452 471 452 473 0.94 12 20 3.4 2.6e+02 3.2 0.0 3 23 502 522 501 522 0.96 13 20 0.092 7.1 8.1 0.5 2 23 545 566 544 566 0.96 14 20 0.031 2.4 9.6 0.9 1 23 570 592 570 592 0.97 15 20 0.0077 0.6 11.5 0.1 1 15 597 611 597 620 0.80 16 20 0.0096 0.74 11.2 0.1 1 23 626 649 626 649 0.95 17 20 0.0012 0.096 14.0 1.6 1 23 656 679 656 679 0.98 18 20 9.3e-05 0.0072 17.6 4.4 1 23 686 708 686 708 0.97 19 20 8.4e-05 0.0065 17.7 2.9 1 23 714 736 714 736 0.98 20 20 0.0025 0.19 13.1 0.2 3 23 741 762 739 762 0.96
Sequence Information
- Coding Sequence
- ATGGTTTTGGTGATTTTGAATACGTgTAACAGCGGAATAACGAGCGAAGGAACTGTTACTAAAGTGGGAACTGATACTGTTACCCAAGACTCGGCacaattaaatgaaaatattaaatcCAAACTTCTGAAAAATGCACGTAATTGCATGAAAAAGAACGCAATCGCCATACTTGATTGCTGGTCAATTTGCCCATTCAGATGGACAAAGAATAAATTCAAATGTGCGTATTGCGAAGACAACTTCACAGAAACCTCTGTTCTACGAGAGCATGTCAGTATGTGCTCAAAGAAACACACTGTCAAGGACATTTACAGCAAATATAGAAGGTTACCCGTGATCAACCTCGATGTTACTGATGCTTCATGTTCCGTCTGTGCTGAACCTTATGCGAACGTTGCTCAGATGCGCGCACACGTGATACAACACGGCTTTAAATTTGACAAGAACCACCCCGATGGTGTAGTCCCATTCTCACTTAATAATGAATCATGGAAATGCGTTATTTGCGAAGACAAATTCAATACCTTCTTACAACTCTACGGACATATGAATGTACATTACCAGCACTACATTTGCGCGATTTGCGGGAAAGGTTACATGACTACCCCTCGCCTACGAAGACATAGGGCTATCCATACTTCTGGTTCGTTCTCTTGCAAGCAATGCGGGAAATTATTCACTTTGCTTTCGGCGAGGGATAATCATAGGGCTGTAGCACACGCCAAAGAACCTCGCTTCAAATGTCCTCACTGCGACATACGGTTCCAAGAGTATAAGGATCGAGCGGCTCATTTGATAGACGCTCATCGGTTCAAGGGAGTCAAATACCCATGTGCACATTGTGAATTATCATTTTCAACGAGTGCCAATCGCAGTTTTCACGTCAGAGCGAAACATATTCGCCCCGAACCCAATTTTAGTTGCACGCAATGTAAAGGAAAGTTTAGGAGCAACGGTGAGTTAAAGGTTCACATGGTGACGCATACAAGGGAGAAGAATTTCAAATGTTCCGTATGTGGAGCGTCATTTCTCAGAAGCAGAAATTTAAGAGATCATTTGAAAACCCATCCGGAAGTCAACTGTAAATTGTGTGGTTCCGTATTCAGAGAGAAGACGCAACTCATTTCGCATCTGAGTACTGTTCATCAGGAATTAGCTGGTTCATCATCCAgGAAAAGCAGCAAATCGAGCGAAGCAACTGTTGTAAAAAAAGACGAATCCAATGTCAAAGATGAAAaggataaattaaataaacagaaGAATGCTATAGCACGTTACATGATGAAAAAGAACGCAGTCTCCATACTGGATTGTTGGTCTGTTTGTCCATTCAGATGGATAAAGAATCGATTTAAATGCGCCTATTGCGAGGGCGACTTCACTGAAAGTAGTTTTCTGCGAAAACATGTCAGtgtttgttcaaaaaaatacacTGTCAAGGATATTTACAGTAAATTCAAAGAAATTCCCGTGATTAACCTCGATGTTACGGATGCTTTATGTTCGTTCTGCGCTGAACCTTATGCGAACGTCGCTCAGATGCGCGCACACGTGATACAACACGGCTTTGAATTTTACAAGAACCATCCAGATGGTATAGTCCTATTCTCGCTTAATAATGAATCATGGAAATGCGCTATTTGCGAAAACAAATTCAATAACTTCCTGAAACTCTACGAACATATGAATGAACATTATCAGCACTACATTTGCGCGTCTTGTGGTAAAGGATACATGACTATCCGTCGGCTGAGAAGACATAAGACTACCCATACTTCTGGTTCATTCCCTTGCAATATATGTGGGAAAGTATTCACTTTGCGATCTGCTAGTGATTCCCATAAAGCAGTAGCTCACGCCAAAGGTCCTCGCTACGAATGTCCTCAATGCGACATGCGTTTCGAAGGCTATTACGACCGAATGGCTCATTTAAAAGAGGTTCATCGGGTGGAAGAAGTCACTTACCAATGTGCGCATTGTGAATTGTCTTTTAAGACAAGCGCCAAGCGCTCTATTCACGTCAGAACAGTACATTTTCCTCCCCAACACGAGTTCAGCTGCACGCAATGTGAATGGAAGTTCAAAACCAACTGTGAGTTAAAGAGGCACATGGTAAAACATACAGGGGAGAGGAATTTCCATTGTTCTGTATGCGGGAAATCGTTTCTAAGGAGTAACGCATTGAGAACTCATTTGAAAACCCATCAGGAAGTCAACTGTAAATGGTGCGGTTCCTTATTCAGACAGAAGGCTCAACTCATTTTGCATCTGAGTACTGTTCATCCGGAATTAGCTGATTCAGCATCTAGTGATTCTGTTATAGCTTAG
- Protein Sequence
- MVLVILNTCNSGITSEGTVTKVGTDTVTQDSAQLNENIKSKLLKNARNCMKKNAIAILDCWSICPFRWTKNKFKCAYCEDNFTETSVLREHVSMCSKKHTVKDIYSKYRRLPVINLDVTDASCSVCAEPYANVAQMRAHVIQHGFKFDKNHPDGVVPFSLNNESWKCVICEDKFNTFLQLYGHMNVHYQHYICAICGKGYMTTPRLRRHRAIHTSGSFSCKQCGKLFTLLSARDNHRAVAHAKEPRFKCPHCDIRFQEYKDRAAHLIDAHRFKGVKYPCAHCELSFSTSANRSFHVRAKHIRPEPNFSCTQCKGKFRSNGELKVHMVTHTREKNFKCSVCGASFLRSRNLRDHLKTHPEVNCKLCGSVFREKTQLISHLSTVHQELAGSSSRKSSKSSEATVVKKDESNVKDEKDKLNKQKNAIARYMMKKNAVSILDCWSVCPFRWIKNRFKCAYCEGDFTESSFLRKHVSVCSKKYTVKDIYSKFKEIPVINLDVTDALCSFCAEPYANVAQMRAHVIQHGFEFYKNHPDGIVLFSLNNESWKCAICENKFNNFLKLYEHMNEHYQHYICASCGKGYMTIRRLRRHKTTHTSGSFPCNICGKVFTLRSASDSHKAVAHAKGPRYECPQCDMRFEGYYDRMAHLKEVHRVEEVTYQCAHCELSFKTSAKRSIHVRTVHFPPQHEFSCTQCEWKFKTNCELKRHMVKHTGERNFHCSVCGKSFLRSNALRTHLKTHQEVNCKWCGSLFRQKAQLILHLSTVHPELADSASSDSVIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -