Prid029014.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596272.1:4174022-4185320[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1e-13 4.9e-10 40.1 2.6 3 44 9 49 7 49 0.96 2 12 4.3 1e+04 -2.5 0.3 16 24 299 307 295 308 0.85 3 12 0.21 4.9e+02 1.7 0.4 19 29 359 369 355 378 0.78 4 12 0.054 1.3e+02 3.6 1.3 9 26 371 388 364 390 0.78 5 12 0.067 1.6e+02 3.3 3.2 6 26 463 485 449 494 0.88 6 12 0.78 1.8e+03 -0.1 0.4 15 28 500 513 493 524 0.81 7 12 0.56 1.3e+03 0.3 2.3 11 23 735 747 728 763 0.80 8 12 0.56 1.3e+03 0.3 0.3 18 28 777 787 769 798 0.79 9 12 0.098 2.3e+02 2.7 0.2 10 27 839 856 824 863 0.84 10 12 0.66 1.6e+03 0.1 5.0 12 40 916 941 912 945 0.80 11 12 3.5 8.3e+03 -2.2 0.6 6 23 949 964 948 968 0.75 12 12 0.12 2.8e+02 2.5 1.1 18 29 1014 1025 999 1041 0.73
Sequence Information
- Coding Sequence
- atgtcGGGTCGTAAAAACAATGTTATTTGGCACCATTTTGAAGAAGACAATAGAACCAATAAAGCAACGTGCAATGAATGCAaagatattttaagttttaaatcAACAACCGCAAATTTAAAAAGTCATTTAAGGAGAAAACATCCTTCAGTTTATTTGTCGGTGTTTGGAGGTGATGACCAGTCCGGTCTTCCATCACGAAGGGAAAATTTCAATTCGcagGGATTACCATCAAAATTACAGAagatcaaacaaaaaattgaaaatgaagAATATAATACCGTACAAAATAATTCCTCTCCATTTCAAAATAATGTGGCGAATCCATTACAAAATTACATGACATTTCCCATACAAAATTATACGCCATCCACTCCCATGCAGTTCTCCGTCAAGCTGAAAGTTGAGGAATGTGATGACCTAGAATTGGATATTATGGAAGAGAATTTGGCTGATGTAACcgaaaaatttaacaatatcCAAGGTTCTGTACCGTCAATGTCAATATCAGATATTGATATCAGTAAAGAAGCTGATGAGTTATTAATGAAAGcagaaaatattaatttagatcCAGATATGTCTCAAGAATGCTCGGAGTCATCAATCCCTTTAGAATTAGCTTCCAAAACGTCTAAAAACTGGATTATTGATCATAaagagaaagagaaagaaaAGCGAAAATATTTCTTGTTGTCCAAAGAAGACATCTTAAGTTATCAACCAGACCCAAATGATATAGCAGGCAAAATGTTATTTATAGAAGTAAGGAACACCCTAGGGCGGGCAATCAAAAACAATAGCAGTTTGGAGATAGGCCTTCATGATACATTAATACAAACTGCTTTATTAAAGAAACAACTCACAGTCAGTCAGTACAAAGATAGCGTATTTATGTACAAGTGTTATATTTGTACCAAAGCCTGGTGGACCTTGTATCCGTTCCGAGAACATATAAGACAACATCGTGAGGCAGATCTGATGGTAAGCACGGAATCAAACGGTCCAGAACTTAATATGATAGCATATACAGGAACGGTACCAGGAAACACAGATATCGAAATTGATTCTAATTGCTGGCACTGTGGAAAAAGCTATGCTTTTCATAAAAAGATTGAGGgcaacaaaactagttatgaTTGCCATTATTGTATGAAACAATTTTTGTTATGCAATATATTGATAACACACGAAGGTGTTTGCTTCTGGCAGATGCTTAAGACGCTAGAAGACGAAACACAGTGCTTCAACTGTCCGTACTGTCTAGTAATTGTATTCAGTAACTCTGAACTGCAAGATCATTTAGTTCTACGGCATTCTGTGAGGTCTGATGTGCCAATGCCGACTACATTTAGGTTCTGTCCGCATTGTAAAGGAAAATACATTCATTTCAAATTACATCCATGTCCGAAACGATCAAGCCATGTACCGTGCTTGCAttgcaatagaaaatttcctaatGACATATTGCGGGATGCACACTTAATGTTATCAAAAGTTAATGTCAAATGTCCTATATGTGGTATTGTTTTGGCTAAGGAATGCATGATGATGGGACATCTATTGGTGCACAGCAATGACTTCACGGTCTGTTCTAAATGTGTTTTGTGTACGGATATCTACGTGTTCTTGGATGTAGAGGCTCAGAGGGATCATAGGATTGTGCGCCATAAATTGTGGTATGACAGTAAGAGGATTATTTTTGAAATGGTGTTAATACCGAATAAATTGTTGGTAAATCCTTGTCCACCACTAATACGTAAACGAGATATAATGATGAAGTCTCCGAGCAGCAGTGCACCAAAAAAGAGAATACGAAGTTCTAACAAAACAAATCAACTGAATTCTGAAGTAATGCTGGAAGAAAAAACAGACAACGTGAACACGAACGTTACAGTGGACGAAGAATCAGTGAAAGATGTAACAGAAGTAATCAAAGTGGAACACAATGAATCGGAAAAAGATACGCCAGACTACGAGAGTATCATCCAAATTAATCAAATAGGATCagcgataataataaaaacagaacaaaatGAAATAGAGCcggataattataataatcatataTCTGATATAAAACAAGATTTGGAGGATGATATTGATGTTGATGTTGAGACAATCGAAAGTAATACGGCAGATGACGAGCAGTTGCTATCCAACGTATTCAGAGTATCAGAAAACTTctcaaacaagaaaaaaacacGTAAACGTAAAATATACGAATGCAATAAATGCGGCTACAAAAACTACGACAGCAAATACAGAttgcatttaaaaaataagtgTGAGCCTGTGAATGAAATTTTGTGGAAGAATGCAGTTTATGGATGTACGAAATGCAATAAAAGCTACTCTACTATGAAAATATATGTAGAGCATTTAACACAGCATGGATACAATTGCTATACTTGTCCAGTATGCTTGGAGGTGTCTGAAAATCCGAGATTATTTAATGTTCATATAAAGCACCATGTGCGAAAGAGTTACCTTAAATTGATACTCTTAAGTCGATCGAAAAAGGAATCAAAAGTGTTACAGTGTAAAAAGTGTAAAGAGAAAGTGACGTGGGACAATTTTTTCGCACATTGGGAGTCGCATTTGGAACTTGGTCAAGTGACTCGCGGAGATGAAGTGGGGAAATGTGAAATGGACACTCCGGTAGAAGTCACTACGGGATTGGGAACTGAAACTATGAAGGAACTTATCAAGCAACTGTTAGACTCAGATCGTCGTCGCCGACCTATGAAGCTATTAAAAAGGGACTGCCACGTGTGTCACAGACATTTTGAGCGAGTGAACAATTGCAAGAGACATCTAATACAACATCTGCTGGCGGATGCATACGCTAACAGACCGCAGAACAAACTGCTGAAGTGCCAGATATGCTGTGAGGGGTACCGGACGGCTGGCAAATACAGAGAGCACATGAGAGATCACGCCTCCCTGCCAATCTTCAAATGTGAGCTGTGCAACTTGACTTGCTGCGACAGCAGCAATTTTACCAAACACAAGAAACTTCACAATATGCGCGAATACATATGTGATATATGCGGGAAGAAGTTTCAAGCGAAAATATCTATTGAAAAACATATGgagGTGTTAGAAAGACTGATACATCATGAAATATACATCGATATATTCTTCAGGAACAACAAAAATCTTATGCTGTATACATCACAAATATTCGAAGGTATCGACTAA
- Protein Sequence
- MSGRKNNVIWHHFEEDNRTNKATCNECKDILSFKSTTANLKSHLRRKHPSVYLSVFGGDDQSGLPSRRENFNSQGLPSKLQKIKQKIENEEYNTVQNNSSPFQNNVANPLQNYMTFPIQNYTPSTPMQFSVKLKVEECDDLELDIMEENLADVTEKFNNIQGSVPSMSISDIDISKEADELLMKAENINLDPDMSQECSESSIPLELASKTSKNWIIDHKEKEKEKRKYFLLSKEDILSYQPDPNDIAGKMLFIEVRNTLGRAIKNNSSLEIGLHDTLIQTALLKKQLTVSQYKDSVFMYKCYICTKAWWTLYPFREHIRQHREADLMVSTESNGPELNMIAYTGTVPGNTDIEIDSNCWHCGKSYAFHKKIEGNKTSYDCHYCMKQFLLCNILITHEGVCFWQMLKTLEDETQCFNCPYCLVIVFSNSELQDHLVLRHSVRSDVPMPTTFRFCPHCKGKYIHFKLHPCPKRSSHVPCLHCNRKFPNDILRDAHLMLSKVNVKCPICGIVLAKECMMMGHLLVHSNDFTVCSKCVLCTDIYVFLDVEAQRDHRIVRHKLWYDSKRIIFEMVLIPNKLLVNPCPPLIRKRDIMMKSPSSSAPKKRIRSSNKTNQLNSEVMLEEKTDNVNTNVTVDEESVKDVTEVIKVEHNESEKDTPDYESIIQINQIGSAIIIKTEQNEIEPDNYNNHISDIKQDLEDDIDVDVETIESNTADDEQLLSNVFRVSENFSNKKKTRKRKIYECNKCGYKNYDSKYRLHLKNKCEPVNEILWKNAVYGCTKCNKSYSTMKIYVEHLTQHGYNCYTCPVCLEVSENPRLFNVHIKHHVRKSYLKLILLSRSKKESKVLQCKKCKEKVTWDNFFAHWESHLELGQVTRGDEVGKCEMDTPVEVTTGLGTETMKELIKQLLDSDRRRRPMKLLKRDCHVCHRHFERVNNCKRHLIQHLLADAYANRPQNKLLKCQICCEGYRTAGKYREHMRDHASLPIFKCELCNLTCCDSSNFTKHKKLHNMREYICDICGKKFQAKISIEKHMEVLERLIHHEIYIDIFFRNNKNLMLYTSQIFEGID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -