Prid015336.1
Basic Information
- Insect
- Polyploca ridens
- Gene Symbol
- -
- Assembly
- GCA_951394255.1
- Location
- OX596255.1:3281962-3282303[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-07 0.00026 21.4 0.2 17 36 1 21 1 28 0.91 2 2 7.7 7.4e+03 -2.4 0.0 21 30 75 84 74 85 0.73
Sequence Information
- Coding Sequence
- ATGTCGTTGAGTGCAGCTTCTAGAAAATATGGCATTCCAGTTTCAACTTTATCTACTAAAGTAAGAGCAATAAAAAGTGGTAAAGAAATATCTTTAAATCCAAAATTCGGAAGAAGCCTAACATTTCCAGACCAATATGAATATCAACTGATCAAACACGTAGCAGATCTTAGAAAGGTAGGAATTGAGATGACCAAAAATGAATTCCTAGAATACACTTACAAATTGGCAGAGCAGCTTGGTATTCCGCATCGGTTCAATCCTGCTACGCGCAAAGCTGGTGAAGATTTTTATATCTCTTTTAGAAAACGAAATCCTGAGTTCTACTTGAAGAAGTGTTGA
- Protein Sequence
- MSLSAASRKYGIPVSTLSTKVRAIKSGKEISLNPKFGRSLTFPDQYEYQLIKHVADLRKVGIEMTKNEFLEYTYKLAEQLGIPHRFNPATRKAGEDFYISFRKRNPEFYLKKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -