Pser008290.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- stc
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000038.1:150032-154404[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 1.1e+04 -4.0 1.6 15 19 268 272 267 272 0.81 2 13 0.49 2e+03 -1.6 3.0 4 10 301 307 299 308 0.91 3 13 7.9e-06 0.032 13.7 14.2 4 18 317 331 315 332 0.95 4 13 2.4e-05 0.096 12.2 12.6 3 19 370 386 358 386 0.86 5 13 4.9e-08 0.0002 20.8 16.1 1 19 426 444 426 444 0.97 6 13 0.34 1.4e+03 -1.1 0.4 5 10 477 482 477 484 0.93 7 13 7.5e-07 0.003 17.0 10.8 4 19 495 510 488 510 0.94 8 13 3 1.2e+04 -5.2 2.0 6 10 540 544 540 544 0.95 9 13 0.00014 0.57 9.7 13.5 1 18 550 571 550 572 0.83 10 13 5.8e-08 0.00023 20.5 14.8 1 18 577 594 577 595 0.97 11 13 3 1.2e+04 -8.8 15.3 9 19 641 652 628 652 0.76 12 13 1e-05 0.041 13.3 14.7 1 16 688 703 688 715 0.88 13 13 0.00015 0.59 9.7 12.5 1 19 720 740 720 740 0.95
Sequence Information
- Coding Sequence
- ATGGACAATTGCGATAGATTTCAATCGATCGTGGCAAATTCCAACCTCGTGGCCACAGCCGGGGAATTTGTACCAAAATCTCTGAtgaatttacaacaaaaaattgaccCAGAGAAATTGCAAAACAATTGCGGGATTTTTACTTCCAACCAGTGcagtaatttacattttcagagCACTTCAAAGCACAGTGAAGCAATTGATGGTGccaataaatattcaaatttaaacagtTCAATCAAGCCTTATGTTGTACCTCGGCAAATTGCTTCTTTTGAATTGGGTGAAAGTAGCAGTTCAAGTAGAAATGTTTCCAAGCCATTCTTCAAGAAAAACACTGCTTATATGCAGGGCaaagctttaaaaaattatgggaaCTGTCAACAGAAGTCCCACAACAAATGGAAGAGAACTACAATagatgaaagtaataatttatgtatgaagCCAATGAGTGGAACAGATTCACATCAACAAGCAAGAAGTCAAcatgacaataaaaaatatttgagaattAACCAAAATGACAAACCAAAACCCACGGAATCAAATACCAGTAGCAAATATAGGGATACAAAAGctagaaatgtaaaaaaaaatgattgtgaAGCAGCTCTGGTAACGAGTCAAAGAGAGCAGTTGGTAGACTTGTTATTTCATGGGGTTTTGGAATGTCTTGTTTGTTGTGAATCAGTGTCCCAGACTAGTGCTGTTTGGAGTTGTTACAACTGTTAtcatgttttacatttaaagtGTGTTGTAAAATGGGCGAGATCATCAAAGAGTGATTTTGGTTGGAGATGTCCTGCTTGTCAGAATGTTACAGATGTAATACCAGACAGTTATTACTGCTTTTGTGGTAAAATCAAAGACCCAGAATGGAATCATCAGGATTGTCCTCATTCATGTGGGGAAGTCTGTGGAAAATCATTTAGAAAGTCTTGCCCTCATAGATGTACTTTGCTGTGTCACCCTGGTCCTTGTCCCCAGTGTATTGCAACAATTGCAAAGAGTTGTGGTTGtcagaaaataacaaaaacagttCAGTGTTCCAGCTCAGAAGTGGTAGTGTGTAATGAAATTTGTGGAAAAGAATTGAACTGCCTTATTCACACCTGTTCAAAGATGTGTCACATTGGAGATTGTGAAGAGTGCACCCAGATAGTTGTTCAAGAGTGCTACTGTCAAAGAAATCAACAAGAAGTAAAATGCACCATTGAAGTGATTGGATGTGATAAATATTCCTGTGGAAATatatgtgaaaaaaatttaagttgtggAAATCACAAGTGTCCAGTGGTTTGCCACAAAGGTGAGTGTCCAGGATGTCAAACAATGCCTGGGACTATCAGGTTTTGTCCATGTGGAAAAACTGAAGTGAAATCTTTATTGGAACATGAAAGAAATTCTTGTACTGATCCAATACCCACATGTGAGTCAATCTGCGGAAAGGTGCTTCCCTGCAGCACTTTAGagAAAACTCACACttgcaaaatgaaatgtcaTGAGGGTCCCTGCCCAGACTGCACTCTGGAGACAGtggtaaaatgtaaatgtggGCACAAGGACAAAAAAGTGCCatgtgagaaattaaaatcattgcATGGAGAAATTTTGtgtgaaaagaaatgttcaaAGAAAAGAAGCTGTGGGAAACACAAGTGCAATCAGATATGTTGCACGGGGGATGATCATCAATGCCCACTTCCGTGTAACCGGTTCCTCCAGTGTGGCCTCCATCGATGCGAAGACAAATGTCACAGAGGTCATTGCAAACCCTGTTTGCGGGCAAGCTTTGACGAACTTTCTTGCGAGTGCGGTGCCCAAGTTATTTTTCCTCCGATTCCATGTGGAAGTCGAAGACCGGCCTGTGATAGACCCTGCTCCCGGATTCATTCTTGTGATCATCCTCCTGTACATACTTGTCACAGTGAGAGCCAGTGTCCACCTTGTACTGTTCTtacgaaaaaattttgtcacgGACGGCATGAGttgCGGAAAGCCGTGCCATGTCATCAAGAGTCTTTTTCCTGCGGATTACCATGCGGAAAAGAATTGGTTTGCGGTAGGCATAAATGCATCTTGCCGTGTCATTCTGGCAGCTGCTTAAAACAAGATCAATGCTGCTCGCAACCCTGCACGGTTCTCCGCCCCGGCTGTGGGCATATATGTGGGACACCGTGCCACGACGGACTTTGTCCTGTCGATGTTCCTTGCAAGGAAGTGGTTAGGGTGACTTGTGAATGCGGTCATAGATATACAACCAGGGCCTGCTACGACAATGCAAAGGAATTTCATCGAATTACAACAGCAAAACTGGCTACGAAAATGGCCGATTTGCAGGCTGGTCAGAGCATAGATTTGAACGTTTTTACTGCCAACAAGAAATTGTCGTACAAAACATTAGAATGTAACGACGAGTGCAAATTGATTGAGAGGAACCGTAGATTGGCGATAGctcttcaaattaaaaatccggATTTGAGTGCTAAATTGACACCTCGCTATTCCGAGTATCTAAAGAATTGGGCGAAAAAGGATGCCAGATTTTGCCAAATGATACACGACAAATTGACAGATTTGGTTCAGTTAGCAAAACAAtcgAAACAAAAATCTCGTAGCTTTTCGTTCGACCCAATGAACAGAGAAAAGCGTCACTTCATCCATGAGTATTGCGATCATTTTGGCTGTGAATCTGTGGCCTACGACCAGGAACCGAAAAGAAATGTCGTTGCCACCGCTCTAAAGGACAAGtctTGGCTTCCAAGCATCTCAGTGGTAGAATTtatacaaaaggaaaatagtcCAAGGAAAGTTCCTGCACCAATAACCATCAAGTCAATTGCTGGAACCTCACAGAgaggaATGGAGACGTTATCAAGTAAACTGCTGTTAGGAGCACAGCAGTCTGATCCCTCTGACGCATCTGCAGGGGGAACCAGTACAGAACCTCAACTTGATTATTTTGATTGGCGACCGCAACACACGTAG
- Protein Sequence
- MDNCDRFQSIVANSNLVATAGEFVPKSLMNLQQKIDPEKLQNNCGIFTSNQCSNLHFQSTSKHSEAIDGANKYSNLNSSIKPYVVPRQIASFELGESSSSSRNVSKPFFKKNTAYMQGKALKNYGNCQQKSHNKWKRTTIDESNNLCMKPMSGTDSHQQARSQHDNKKYLRINQNDKPKPTESNTSSKYRDTKARNVKKNDCEAALVTSQREQLVDLLFHGVLECLVCCESVSQTSAVWSCYNCYHVLHLKCVVKWARSSKSDFGWRCPACQNVTDVIPDSYYCFCGKIKDPEWNHQDCPHSCGEVCGKSFRKSCPHRCTLLCHPGPCPQCIATIAKSCGCQKITKTVQCSSSEVVVCNEICGKELNCLIHTCSKMCHIGDCEECTQIVVQECYCQRNQQEVKCTIEVIGCDKYSCGNICEKNLSCGNHKCPVVCHKGECPGCQTMPGTIRFCPCGKTEVKSLLEHERNSCTDPIPTCESICGKVLPCSTLEKTHTCKMKCHEGPCPDCTLETVVKCKCGHKDKKVPCEKLKSLHGEILCEKKCSKKRSCGKHKCNQICCTGDDHQCPLPCNRFLQCGLHRCEDKCHRGHCKPCLRASFDELSCECGAQVIFPPIPCGSRRPACDRPCSRIHSCDHPPVHTCHSESQCPPCTVLTKKFCHGRHELRKAVPCHQESFSCGLPCGKELVCGRHKCILPCHSGSCLKQDQCCSQPCTVLRPGCGHICGTPCHDGLCPVDVPCKEVVRVTCECGHRYTTRACYDNAKEFHRITTAKLATKMADLQAGQSIDLNVFTANKKLSYKTLECNDECKLIERNRRLAIALQIKNPDLSAKLTPRYSEYLKNWAKKDARFCQMIHDKLTDLVQLAKQSKQKSRSFSFDPMNREKRHFIHEYCDHFGCESVAYDQEPKRNVVATALKDKSWLPSISVVEFIQKENSPRKVPAPITIKSIAGTSQRGMETLSSKLLLGAQQSDPSDASAGGTSTEPQLDYFDWRPQHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -