Pser008082.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000037.1:12806465-12809125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.7 1e+02 3.1 0.2 1 10 73 82 73 96 0.88 2 17 0.13 7.7 6.7 0.7 1 19 101 119 101 122 0.80 3 17 0.0021 0.12 12.3 6.3 2 23 132 153 131 153 0.95 4 17 0.091 5.3 7.2 4.1 1 21 158 178 158 179 0.95 5 17 0.41 24 5.1 0.7 2 23 198 219 198 220 0.94 6 17 1.1e-05 0.00064 19.5 3.2 1 23 253 275 253 275 0.98 7 17 0.87 51 4.1 1.3 2 23 455 477 454 477 0.94 8 17 0.015 0.86 9.6 0.7 1 23 483 505 483 505 0.98 9 17 0.021 1.2 9.2 2.6 1 19 512 530 512 533 0.93 10 17 0.00038 0.022 14.6 3.0 2 21 548 567 548 568 0.95 11 17 1 59 3.9 1.0 1 23 629 652 629 652 0.87 12 17 5 2.9e+02 1.7 3.2 2 23 659 678 658 678 0.91 13 17 0.0061 0.35 10.9 0.7 1 23 684 706 684 706 0.88 14 17 0.12 6.9 6.8 1.4 1 21 711 731 711 732 0.93 15 17 6.3e-05 0.0037 17.1 1.3 2 23 745 766 744 766 0.96 16 17 0.00023 0.013 15.4 0.7 3 23 780 800 778 800 0.97 17 17 0.083 4.8 7.3 3.5 1 23 806 828 806 828 0.96
Sequence Information
- Coding Sequence
- ATGAATGTTCATATAAGCAGACAACATGGTATTGTTTTCAAACCTGAATCATTACTGGCAAGTCACAATATCAAGGAAAACTGCacagaggaaaatgaaatctgTAGCAAGTTCCATCAAGAGTTTTCAGTTCACAAGAGTCATTTGGACACTAAAGAAGACAGTGAGGGGAAGGAATCAAGTCAGTCAAAAGAGGATTCTCTTGAAAAATTAGATTATGAGTGTAACAAATGTGAGGAAAAGTTCTTGAACCTCATTAAACCGCAGGCCCACATTGTGAAGACACATGAGCAAGTCAAATATCAATGTGAGAAGTGCGATCGAGCATTTCTTTGCCAGAAAGACCTGGAAGCTCACGTAGAGAAAGAGAACTGCTTAGAAGAGGTCACTTGCACATGTCAGGTGTGTGGAAAAGGTTTTGCAAAACTGGACTGCTTAAAAAAGCATCAGCATGAACATACAAACGTTACATTTAAGTGCAAATTCTGTTACTGCCCTTTCATGCgagaaaaaagttatattCGTCACATTCAGAAAATGAATTGCTCGAAGAACGCCAGGAAAAGCAAACTGATGGAGTTCAATTTCCGCAAGTGCAGAATTTGCCAGGTGGAGTATGACAATGAGGCCTTCCTCTTGGCCCATTTCAAGGAGCACCACAAAAACGAAGAACCTCACCAATGTTTTTGCTGTGACTCTCGCCTTCCCACTTTTCGCGATTTGCAAATGCATATTCACGATCACGATGTGAAGAAGTACACGTGCCACTTGTGCGGGAAACCCTACACCAGCCAGGAAGGCTTCCGTAAACACAGGCTCAAACATAAAGGAGCGGAGTTCAAGTGCAAATTCTGCGAATCTGAGTTTCTTAACGAAAGTAGGTTCAAATTTCACGAGAAGACATGCAGGAAGAACCCAGAAATGGGCTATGATCCGATCCTTGACAagccaaaaaagaaagatgaaacACCTAAGCACAGTCGCCAACTTCACTGGGAAAGCCGAATTATTGTGAAACGTTTGAGGGGAGACCCTAAGTCGGGACAGCCTGATATTCAAACGTCTGCGAGACCAAATGAAAGTTCTCTAGCCTTGGTCTTCTTCGATGAGTCTGATTCAGAGCCTAACAATGAGAGAGGATGGTTTGACAATTACTACAAAACAGAGGAAGACGAAATAGCTTTTGGCCTTAGGAAAGCAGACGGTACACCACGAGAACCGCAAAGCAATGACGATATgatgcaaaataataaaaaaagttccGCCGAACCTATAGAATCAAGTTCGGGCACTTCGGAATCAAGCTCGAGTGAAGAGGACGAGAGTCTGGTTGATGAACTTCCCATCGACTACAACCCCAAAAAATGCAGACTATGTTTAGTTACCTATGACCAAGAATATGAGCTTTTGCATCACTTCATCAAGGTTCACCCGACCGAAATGGCCCATAAATGCCCCATTTGTAATTCCCAAAGCCCGCTTTTCGCCCAACTTAAGGAGCACATGAAGATTCACGGAATCGGGATGAATATTTTCTACTGCGACAACTGttctaaaaagtttaaaagtgagaagaagatgaggagTCACAACTTGAAATGCAAAGCCTCGGCGattggagaagaaaaaacacacaGCGAACGCTGCAAAAGATGtggaaagaaattcaatactAAATTTGGATATCGCCGGCACCGCCGACTATGcaaggtgaaaaagaaactggtgaagaaaacaaaacaatgccTAGGCGTGGCACAAATAGCAGATACAGGCGTGGCACAGGAGGCAGACAAACATTCCCAGGAAAGTACTAATCcgtcattaattaaatcaactgAAGAAGGTAAAGCAATTCAGGTTGTAGAACCTCCAATGGACAGTTTCCCCTGCCGGCTTTGCGAAAAAAAGTTCCAGTACGAGAGGGGCATTGTGATGCACTTTAAATCATCCCATCCTGGACACAAACCCCTGGTATGTCACGTGTGCAACATGCACCTGGCGGACAAATTAAAAGAGCACCTCAAAACCCACGGAATCGGTGAGGAGTTTATCTGCGAGCTTTGCGGTAAGCGATTCAACCAGAAGTTTTTGTCGAAGATTCATGAAATGTGGCACGAGGGAATCGAGTATAAGTGTAATAACTGCAAGCAGAAATTcctaaataaagaaaaaatggacAAACACGTGAGAGAGAATCGGTGTAGCAACCGTCAGTCACTGATGCGTCTGCCATGCCTCATTTGCGGCAAGTCGTGCAGATCGAAATTTGGTCTGAACCAACACTACATCACGCATACACCCAAAGAGCTGAGACCCGTGAAAAATCGGATGAACTGTGAATATTGCGGCAAGTGGTTTCAGAGCAACAATGGATTACAAAGACACCGGAGGATACATACGGGGGAAAGGCCGTTTTGCTGTCGGTTCTGTCCGAAGGCTTTTGCACAGGAGGGCAACTGTAAGGTGCATGAAAAGATTCACACAGGGGAGGCACGGCGGAGAAACAAGAAGACCCAAATTCCACATGTCAAGCAAGCCATACAGGTGGTAGCGCAACAGACAGTCGTACCAGTTCAACCACCAACTACCTCGCCATATCCAGGACACTTAACCGTGTATATGTACGACGGCATCAATTCTAATGCTGCTGTTCACTGA
- Protein Sequence
- MNVHISRQHGIVFKPESLLASHNIKENCTEENEICSKFHQEFSVHKSHLDTKEDSEGKESSQSKEDSLEKLDYECNKCEEKFLNLIKPQAHIVKTHEQVKYQCEKCDRAFLCQKDLEAHVEKENCLEEVTCTCQVCGKGFAKLDCLKKHQHEHTNVTFKCKFCYCPFMREKSYIRHIQKMNCSKNARKSKLMEFNFRKCRICQVEYDNEAFLLAHFKEHHKNEEPHQCFCCDSRLPTFRDLQMHIHDHDVKKYTCHLCGKPYTSQEGFRKHRLKHKGAEFKCKFCESEFLNESRFKFHEKTCRKNPEMGYDPILDKPKKKDETPKHSRQLHWESRIIVKRLRGDPKSGQPDIQTSARPNESSLALVFFDESDSEPNNERGWFDNYYKTEEDEIAFGLRKADGTPREPQSNDDMMQNNKKSSAEPIESSSGTSESSSSEEDESLVDELPIDYNPKKCRLCLVTYDQEYELLHHFIKVHPTEMAHKCPICNSQSPLFAQLKEHMKIHGIGMNIFYCDNCSKKFKSEKKMRSHNLKCKASAIGEEKTHSERCKRCGKKFNTKFGYRRHRRLCKVKKKLVKKTKQCLGVAQIADTGVAQEADKHSQESTNPSLIKSTEEGKAIQVVEPPMDSFPCRLCEKKFQYERGIVMHFKSSHPGHKPLVCHVCNMHLADKLKEHLKTHGIGEEFICELCGKRFNQKFLSKIHEMWHEGIEYKCNNCKQKFLNKEKMDKHVRENRCSNRQSLMRLPCLICGKSCRSKFGLNQHYITHTPKELRPVKNRMNCEYCGKWFQSNNGLQRHRRIHTGERPFCCRFCPKAFAQEGNCKVHEKIHTGEARRRNKKTQIPHVKQAIQVVAQQTVVPVQPPTTSPYPGHLTVYMYDGINSNAAVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -