Pser004271.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000004.1:8841587-8844294[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.063 13.2 0.7 3 23 236 256 234 256 0.94 2 14 0.0047 0.28 11.2 0.5 1 23 271 294 271 294 0.96 3 14 3.2 1.9e+02 2.3 0.3 2 20 312 330 311 334 0.84 4 14 9e-06 0.00053 19.8 0.2 2 23 383 405 382 405 0.95 5 14 0.022 1.3 9.1 2.4 3 23 416 437 415 437 0.92 6 14 0.001 0.059 13.3 1.0 1 21 487 507 487 508 0.96 7 14 3.8e-05 0.0022 17.8 4.4 1 23 513 536 513 536 0.92 8 14 4.9e-05 0.0028 17.5 3.9 2 23 543 565 542 565 0.96 9 14 0.017 0.96 9.5 0.1 1 23 572 595 572 595 0.93 10 14 5.8e-05 0.0034 17.2 0.3 1 23 601 623 601 623 0.98 11 14 5.9e-05 0.0034 17.2 0.9 2 23 631 652 630 652 0.97 12 14 2.9e-07 1.7e-05 24.5 3.3 1 23 658 682 658 682 0.97 13 14 0.00098 0.057 13.4 2.8 1 23 688 710 688 710 0.95 14 14 0.024 1.4 9.0 4.6 1 23 716 739 716 739 0.98
Sequence Information
- Coding Sequence
- ATGGACGAGACGGACACTCAAGAAATTGTGGTCGATTTTGGAAAGATTTGCCGGTTGTGTCTCACCGGCGATGGAGttcttataaatttgtttccttccGATCACCATCAAGAAATCGGAACAAAAACGATACCGGAAAAAGTAATGGATCTGATGTCCATCGcgGTCATAAAAAATGATGGATTTCCTTCATGGATATGTCACAATTGCTTGTCTCTGGTGGATAAATGTTATGAATTCTTTGATCAATGTCGAACCAACCAGGCAGCTCTTAATGAAAGTTACATTGCTGCTCTCTCGGAGGCAGGTGTAAGTGTTGTCCCACTTAAGGTTAGTTATATTGATAATGAAGATGATGAAGCCAAAACTTGTGAACAGGTGATTGAGGTCCCAAGTAGTGCAGAAGTTAAAGTGCCAAAGAAAGATGTTAGTCAAAGTACTGTAGATAAAGAATTTCCTTTGAGTGAATGTACCAAAGAATTGAAGACCTCCAATGAGAGTCATGTACAACAATTTAAAGCATGTTATGATGATTTGGTGTATAAGCCTGAAGAAGTAGAACACAAACCTGACTCAAGGGGCTTCTACAACTGCATTTTCTGCAATGCcaaatttcataataaaaatgcaatCAGCACTCATGTTAACTTTAAACACACCAAGACTGAAAATGACCATGGAGTGGATTTAGAAAAACTGATGTTTTGCAAATATTGTGGCTTGTCATTCAGCAGGAAAAACATAAGTCGACATATGGAAGTGGTGCATAGGATGACAAAAAACACAGAACCTGACCAGAAAGACATATCATTTGATTGCAGAATTTGTTACAGGCCCTTTCTAAGGGAATCCTCATTGAGGACTCACATTGAAAAGGTTCATGGAGACAACCTGGAAATGATGGcagaagttgaaaattgtgaaattgtttGGAACTGCAGTGAATGTGACTCAGTTTTCTTGAATGTAACTAGCCTCATGCAACACTTCGGTAACAAACACTCAAAGTATCCACTTGAGGTGGATACCTTGCGCGGCTTAAAAAGCAGAAATCTCATTTGCAATTGTGGGGTCATAAGTTCCAACTCATTCGATGCGACCCTTCACGGGatcttttttcattctgaCGTTAAACAGTTCGAGTGGGAGTGCCCAgggtgtgaaaaaaaatttcgcaGTTCCAACGaacttcaaattcatttaatttcattccacTGGTTCTCGTCAATGAGCTATGAAAACAACTGCGTATTTTGTGGTCAGTCGTTTAAATCTAACGATTTATTAAGGTGCCATCTAAACGAAACGCACttaataagttttgaaaaaaacacATTGGAAGACAACAAAActagcaaaagaagaaaagaagacgaGAACGAGGTGAAATCAGAGGCGAAATCAGAGGTGGAAACATTCGATGAGACTGAGAGAGGAACCGAAGATTCctcttgtttgtttgtgtgCGAAAGTTGCGGTGAGTTCTGTAAGACTGAAAAAAACCTCGAGGTTCATtatagaaattgtaatttttctcataaatGCAAATTATGTGGAAAGGGCTATAAAACGAACAACCATCTCAAGAGGCACGTGGCTGAGTTTCACAACACTCTGGCCCCCATAAAATGTCCTCTTTGCCCTAAAATTTTCCCACGAAAAATGAACCTTCATCATCACTACAAGAGAAGACATTTAAAACAGACgaagaaatttgtttgctCCTACTGCGGACAATCGCTCAAAGGCATTGTCGCTCTCAGAAGTCACGAAGACAGACTTCACAGGAACGTGAGACAGTACAAATGTTCCGATTGTCCTGAGGCTTTCACGACTCGAGGCATCCTTAGAAAACACGCCCAGAGACATTTGACGGAACGTCCGATGCTTCAGTGTCAGTTTTGCGAGAAAAAGTTCAGCACGATAAGCGGAATCGAAAGGCACATAAAAACGCATGAGGGCGTCAAAGAGTTCCAGTGCGACATGCCACACTGCGGCAAGTCCTTCTACACTAAAAGCGAACTAAAAAGACACATCAAATTCCATACGAGAGACTTCAAACACATTTGCCCAGTGTGCAACCACAAGTTCATGTCACCCGGAGAACTCAAAAAGCACTCGACGAAACATACGGGAGAAAGACCTTTCAAGTGTCACCTGTGCTCGTGTGCCTACGCCAGGAGAGACGATAAAGTGAAACACCTGAAACGAGTGCACAATTTGAAGGTGAAAAGAGTGTACGGGAAATCGCTGTTGAGGACAGGCGAAGACGATTATTTGGTTGATACGATTGTGATAGACGAAGGTAGTACGGAAAATACAAATGCAGACGGAGCGAAGCAGTGA
- Protein Sequence
- MDETDTQEIVVDFGKICRLCLTGDGVLINLFPSDHHQEIGTKTIPEKVMDLMSIAVIKNDGFPSWICHNCLSLVDKCYEFFDQCRTNQAALNESYIAALSEAGVSVVPLKVSYIDNEDDEAKTCEQVIEVPSSAEVKVPKKDVSQSTVDKEFPLSECTKELKTSNESHVQQFKACYDDLVYKPEEVEHKPDSRGFYNCIFCNAKFHNKNAISTHVNFKHTKTENDHGVDLEKLMFCKYCGLSFSRKNISRHMEVVHRMTKNTEPDQKDISFDCRICYRPFLRESSLRTHIEKVHGDNLEMMAEVENCEIVWNCSECDSVFLNVTSLMQHFGNKHSKYPLEVDTLRGLKSRNLICNCGVISSNSFDATLHGIFFHSDVKQFEWECPGCEKKFRSSNELQIHLISFHWFSSMSYENNCVFCGQSFKSNDLLRCHLNETHLISFEKNTLEDNKTSKRRKEDENEVKSEAKSEVETFDETERGTEDSSCLFVCESCGEFCKTEKNLEVHYRNCNFSHKCKLCGKGYKTNNHLKRHVAEFHNTLAPIKCPLCPKIFPRKMNLHHHYKRRHLKQTKKFVCSYCGQSLKGIVALRSHEDRLHRNVRQYKCSDCPEAFTTRGILRKHAQRHLTERPMLQCQFCEKKFSTISGIERHIKTHEGVKEFQCDMPHCGKSFYTKSELKRHIKFHTRDFKHICPVCNHKFMSPGELKKHSTKHTGERPFKCHLCSCAYARRDDKVKHLKRVHNLKVKRVYGKSLLRTGEDDYLVDTIVIDEGSTENTNADGAKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -