Pser006897.3
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- ZIPIC
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000036.1:14265636-14269484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.35 20 5.3 0.0 2 23 7 28 6 28 0.95 2 16 0.11 6.4 6.9 2.2 1 23 778 801 778 801 0.96 3 16 7.6 4.4e+02 1.1 0.2 1 23 818 841 818 841 0.89 4 16 0.048 2.8 8.0 0.2 2 23 903 925 902 925 0.96 5 16 0.013 0.74 9.9 0.2 1 23 930 952 930 952 0.98 6 16 3.5e-05 0.002 17.9 2.6 2 23 955 976 954 976 0.97 7 16 5.8e-06 0.00034 20.4 0.3 1 23 982 1004 982 1004 0.98 8 16 3.8e-06 0.00022 20.9 5.0 2 23 1011 1032 1010 1033 0.94 9 16 1 59 3.9 1.3 6 23 1047 1064 1045 1064 0.95 10 16 0.0011 0.066 13.2 0.8 2 23 1070 1092 1069 1092 0.96 11 16 0.0005 0.029 14.3 0.1 2 23 1108 1128 1107 1128 0.97 12 16 5.1e-05 0.003 17.4 0.9 1 19 1134 1152 1134 1156 0.93 13 16 0.0037 0.21 11.6 0.1 1 23 1164 1186 1164 1186 0.98 14 16 0.0015 0.088 12.8 3.1 1 23 1192 1214 1192 1214 0.96 15 16 0.0035 0.2 11.6 0.8 1 23 1220 1244 1220 1244 0.95 16 16 0.00094 0.055 13.4 6.1 1 23 1250 1272 1250 1272 0.98
Sequence Information
- Coding Sequence
- atggaaaacaccAACACTGTGTGTCCTGTGTGTACCCTTTATTTGAGGGAGGGAATAAACTTGCAAGCTCACCTTGAAACACATCCCAAGGAGCAAGTTATTGCAgctttgttgaaaatttcaaatggaggTACATATGTTCCACAAGCTCCAACAGCATCTACATCTACTGTACCTTCTCAGATGCCAGTACAGACATTTACAAATTCACAGTCATCATTCATATCTGCACCATATCTTAATCCACAAACACAGATGACAACAGCTGTTACTTACCAACACTTCATGACAAGTAATGGATCTGCCATCATGCCACAATACATTCAAGTTCCAACCATTGTAAACCCTAATGGTAATATTCCTGTCATTTCCAATCAGGCCATGAATTTTATTCCTAACCAATCAGTTAATTACTCTCAAACTGTATATAATCCACTTTATAATCCTTACATACCACAGCCCTATCCATTTAATCAACAGTTGTACACAAGTCTCCCAATAAGTGCACCACCCACAGGAGGAACAGCAGATCAACCAACTACTCAGAATGAAAGCTTAAATGAAAGTGATGAAATCACTATTCAAGAAGAATTACCACCTGATCCAaacttgttaattaaaaagtgcACTGCCCTACCTGGTAAACAAATCAGAAAAAGACTAGTTAAGAAGGTGAAAAAATCCAACACAAAGTGTAAAAAATCGTCAAAAATAAGAAGAGTATTTAAACCTAAATTAAGTGAACCTTCTAGTTCATTATCAGTAATTAAGTCACCTGTGAGTGAAACAACAAATAACAAGGAATCCACAGCAGCTAAGGGAACTGTCATTAGAACATTAAGGCCAAAAAGTGCACTGGGACTATCCAACATGTCTGTAATACCTCCAGCACCTTTAACACCCATCACAAAACCAACAACTAATTCAATGTTGGATCCAAAAACACCTCCACCTCCACCACCTCTATCAAAGGCACCCTGCATTGTATCTCAGTCCACaatgtttattaaaagtgAGGACACATTAGAGTGTGCAAGGCCACGCTCAACACCAGCAATAATTATTGGAAGTCATAGTTACaatgaattcaaatgttttgatgaacctgaaaaagtGAATTCAGTAATTGTGGACTCCAATAACGCAATAGCATGTGGTAGTGAAAACAGTAATAAACATAACCAATTAGAATCACAGTGGAGAACAAAATCTTTGGGAAGCGTAATAGCaaccaaaagtaaaaacattactAAAGAGGTAATGAGCACACCCATCAGTGAAGAAATAACTATAACAAAAGTAACAACCGCAATGGAGGACTACCATGAAGGACCCGAaggagaagatgaagatgaaataAACAGAGAGATAGAGGACTGTGATGAAAGTACAGAAAAGCAGGGAGAATATTTCGAAATGATTGAGGTGGGCGAAGAAAGTAAAGTAACTATCATGGAAACTGCACTGAATCAAGAGAGAAGTACCGAAGGCGTTATCGAGAATCAtgatgaaattaatagtaGAAGTTCGGATTCTTTTCAACAAAGcgaaaacaatatttgcaaTGGAAATTTGGACAAAAGTTCGGCTGATGTTTCATTCATAGTGATCGACAGCAACAAGACAGTTGGTCAGCAAGGTAAAATTAGTGATAAAGAGAAGGATAATCAAATATTACGAGAATTAAATTATGGGAGTAGAGAATTTGGTCAGCCATCAAGAGCAGTGACTGAAGATGTTATTGATGAATCTACTAAAAAACAATCAGATTTGCCACCGACAATTAACACGTCCAGGGTTCTTTGTGACCTCACTCTACCAACAGGAATTAATCTTAGCAGCTACATGGAGGTGGagggaattaaaatatttttcaataacaatgCGACAACAACAGCCATACCCTTTGATCCAATATTGAAACTCTCAAGTACAGCCAGCAATAACCGAGACGTAACTGGATTTATGAAGACGGAAAATTCTGTCGGCAATTCGACCATTATGGACTCAGTTATACACCTAGTCTCCGGCAACAGTGAATCGAAAAATGGATTTACATTCGGTGAAAATTACACGGCAACTACCAGCCAGGGAAACGAAAGTCAAATGGACTTGTCAGATCTTTCCCCATTGCCTTTGAATATTCAGGCAGATGAGTCGATGCCTGCCAGGGGTGAGTTGTCCGAGCAAGAGAGTCTTGGAGCCGAAAACTCAACATGGAACCTCTTTCATGGCAGTGACAGCAACAATACTAAAAGTCTAGAGGACTGGAAAAATTCTGACAACGCCCAGATAGTGTCGGTAATAGGAACCAAAAAGGGAGGCAAAACGTTCAAGTGTTCTGTGTGCAGCGAGGTCTTTTCTTGTCCGAAGGAGAGAAGAGTTCACAAAAATACTGTTCACTTcaacaaaatggagaaagagTCCCCGACGGcaaaaaaacagaagcaaTACCCTTGTAGTTTTTGCAGTGGGATCTTCATGACTCTTCGCGATAGGAGAATGCACGTTTTGGAGATGCACCTTGAGgaacataaaaacaagaaacctGATAATCAAATAAAAGAGGAGACTGCAGATTCTGAAGCTGTCAGCGCGAGCAACACTGCGGCGACCATCAAACATGAAAACGACCAAGGAAACAACAATGTTAAGACTGAAACATCAATTCAGACAACTGAAATGACAGAAGCTCAAAGGGTTAAGTACTGTTCCCAGTGCAGTTTACCATTCGTCGGAATAAAAAAGCTGCGGGAACACCTGAGAGTCGTCCACGGGGAGATTCGGTTCAAGTGTGAGACGTGTTCTCAAACCTTCGACGAGGATGCTGAATATAATGAACATCTGCTTGTCCATCCACTTGTGTGCGACAAATGCGGTAAAACTTTCCATAAGAGACCCAACTTGAACCTACACCTGAAAAGACATTTAGAAGTGAAGCCGTACGAATGTTCCCTGTGCCCGAAGTCTTTCATCACGCGACAGAAACTGGAGGAACATATGAACGGTCACTCGGGAAAGAAGCCATTGAAGTGCAGTCTATGTGATAAAACATTCAGCAGGCATTCGAACTTGATACAACACAGGAATATACATCATTTtaatgttaagaaaaaaattaaagacttTGTATGCAGGTGCGGTGAGGTTTTCCACAGTTTCAGAAAGTTGGAATGGCACAAGGAAGTTCACGAGTCCAAGCCAAAGCCATGTCCTTTCTGCGCCCAGAAGTTCATTCACAGTGCGAGCGTAACTAGGCACATACGAAGAGCTCATCTGCCGGACTACTTGCCGGGTGACAATCGGGAGTACGACAATGTGCAGTGTCCCGTATGCGAGAAGGTGTACCTGCGATCGTCCCTAGTCGTTCACATGAGAGTCCACAACGGTGAGAAACCGTTTGCTTGCAAAATATGCAACAAACGATTTTCTACAAAGTGGAATTTGGAGCTTCACAACTGGACACATCAGTCTCGGAGCAACATGCCTTTCAAGTGTCAAATATGCAAGGGGGCATTCTTTCGGGAACCAGATTTCGTGGCCCACATGAACGCCCACCGTAACTACAAACCATTCACGTGCAATGTCTGTGGACAGAAGTTCATTAGGAAGTACAGTTGTATCCGACATCAAGAGGAGCACAAGAAAAGCAAGCAGTTCGTGTGTGCGGTCAGCGGGTGTGCCAAAAGCTTTCACAGGGGTTACTATCTGAGAGACCATATGAAGGTGCATACGGGAGTACGCCCCCATACCTGTCACATATGCGGCAAAGCATCGAGCACTAAGTCTAACCATAATAAGCATGTCCGCATACATGACACGAGGGAACCCGttaatacagaaaattaa
- Protein Sequence
- MENTNTVCPVCTLYLREGINLQAHLETHPKEQVIAALLKISNGGTYVPQAPTASTSTVPSQMPVQTFTNSQSSFISAPYLNPQTQMTTAVTYQHFMTSNGSAIMPQYIQVPTIVNPNGNIPVISNQAMNFIPNQSVNYSQTVYNPLYNPYIPQPYPFNQQLYTSLPISAPPTGGTADQPTTQNESLNESDEITIQEELPPDPNLLIKKCTALPGKQIRKRLVKKVKKSNTKCKKSSKIRRVFKPKLSEPSSSLSVIKSPVSETTNNKESTAAKGTVIRTLRPKSALGLSNMSVIPPAPLTPITKPTTNSMLDPKTPPPPPPLSKAPCIVSQSTMFIKSEDTLECARPRSTPAIIIGSHSYNEFKCFDEPEKVNSVIVDSNNAIACGSENSNKHNQLESQWRTKSLGSVIATKSKNITKEVMSTPISEEITITKVTTAMEDYHEGPEGEDEDEINREIEDCDESTEKQGEYFEMIEVGEESKVTIMETALNQERSTEGVIENHDEINSRSSDSFQQSENNICNGNLDKSSADVSFIVIDSNKTVGQQGKISDKEKDNQILRELNYGSREFGQPSRAVTEDVIDESTKKQSDLPPTINTSRVLCDLTLPTGINLSSYMEVEGIKIFFNNNATTTAIPFDPILKLSSTASNNRDVTGFMKTENSVGNSTIMDSVIHLVSGNSESKNGFTFGENYTATTSQGNESQMDLSDLSPLPLNIQADESMPARGELSEQESLGAENSTWNLFHGSDSNNTKSLEDWKNSDNAQIVSVIGTKKGGKTFKCSVCSEVFSCPKERRVHKNTVHFNKMEKESPTAKKQKQYPCSFCSGIFMTLRDRRMHVLEMHLEEHKNKKPDNQIKEETADSEAVSASNTAATIKHENDQGNNNVKTETSIQTTEMTEAQRVKYCSQCSLPFVGIKKLREHLRVVHGEIRFKCETCSQTFDEDAEYNEHLLVHPLVCDKCGKTFHKRPNLNLHLKRHLEVKPYECSLCPKSFITRQKLEEHMNGHSGKKPLKCSLCDKTFSRHSNLIQHRNIHHFNVKKKIKDFVCRCGEVFHSFRKLEWHKEVHESKPKPCPFCAQKFIHSASVTRHIRRAHLPDYLPGDNREYDNVQCPVCEKVYLRSSLVVHMRVHNGEKPFACKICNKRFSTKWNLELHNWTHQSRSNMPFKCQICKGAFFREPDFVAHMNAHRNYKPFTCNVCGQKFIRKYSCIRHQEEHKKSKQFVCAVSGCAKSFHRGYYLRDHMKVHTGVRPHTCHICGKASSTKSNHNKHVRIHDTREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -