Basic Information

Insect: Polyplax serrata
Gene Symbol: -
Assembly: GCA_037055365.1
Location: JAWJWE010000036.1:5929412-5932763[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00031 0.018 14.9 1.2 1 23 209 232 209 232 0.92

2 17 0.0073 0.42 10.6 2.7 2 23 237 258 236 258 0.96

3 17 0.0001 0.0058 16.5 0.6 1 23 284 306 284 306 0.96

4 17 0.0028 0.16 11.9 0.3 1 23 312 334 312 334 0.98

5 17 0.00088 0.051 13.5 0.3 1 23 359 381 359 381 0.98

6 17 0.15 8.5 6.5 0.1 1 22 414 435 414 435 0.92

7 17 0.95 55 4.0 0.1 1 20 557 576 557 580 0.90

8 17 0.0025 0.15 12.1 0.5 1 23 583 605 583 605 0.93

9 17 0.026 1.5 8.9 3.9 1 23 617 639 617 639 0.95

10 17 0.00069 0.04 13.8 0.1 2 23 646 668 645 668 0.91

11 17 0.0062 0.36 10.8 2.5 3 23 673 693 672 693 0.95

12 17 5.1e-05 0.003 17.4 1.4 1 23 701 723 701 723 0.97

13 17 0.0062 0.36 10.8 0.3 1 23 729 751 729 751 0.96

14 17 1.5e-05 0.00085 19.1 0.7 1 23 757 779 757 779 0.98

15 17 1.1e-05 0.00062 19.5 4.2 1 23 785 807 785 807 0.99

16 17 1.5e-05 0.00089 19.0 1.1 1 23 813 835 813 835 0.98

17 17 0.00072 0.042 13.8 1.2 1 23 841 864 841 864 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00031	0.018	14.9	1.2	1	23	209	232	209	232	0.92
2	17	0.0073	0.42	10.6	2.7	2	23	237	258	236	258	0.96
3	17	0.0001	0.0058	16.5	0.6	1	23	284	306	284	306	0.96
4	17	0.0028	0.16	11.9	0.3	1	23	312	334	312	334	0.98
5	17	0.00088	0.051	13.5	0.3	1	23	359	381	359	381	0.98
6	17	0.15	8.5	6.5	0.1	1	22	414	435	414	435	0.92
7	17	0.95	55	4.0	0.1	1	20	557	576	557	580	0.90
8	17	0.0025	0.15	12.1	0.5	1	23	583	605	583	605	0.93
9	17	0.026	1.5	8.9	3.9	1	23	617	639	617	639	0.95
10	17	0.00069	0.04	13.8	0.1	2	23	646	668	645	668	0.91
11	17	0.0062	0.36	10.8	2.5	3	23	673	693	672	693	0.95
12	17	5.1e-05	0.003	17.4	1.4	1	23	701	723	701	723	0.97
13	17	0.0062	0.36	10.8	0.3	1	23	729	751	729	751	0.96
14	17	1.5e-05	0.00085	19.1	0.7	1	23	757	779	757	779	0.98
15	17	1.1e-05	0.00062	19.5	4.2	1	23	785	807	785	807	0.99
16	17	1.5e-05	0.00089	19.0	1.1	1	23	813	835	813	835	0.98
17	17	0.00072	0.042	13.8	1.2	1	23	841	864	841	864	0.97

Sequence Information

Coding Sequence: aTGAAGACAACAAGTGGAGATTTAAGAACTTTGAAGCCAATTTTGCCAAAGCTAAATCCAGTGGTGACTAgagtaatagaaataaatgcTCCTGCAATGCAGATGTGcaaatgttttgtttgtgATGAAAGAGTCATCAGCAGTGGAGTACCTTTACTCCAAAGCACCACCCAAGTATCAAACACTGATCTTCCAACAAAAATTGGACAACTTATGGGAGAGAAGTTCATGGTGGTTGTATCAGCTGATGATGTGCTTTGCAGAAAATGCCACGCTTTAGTCAACCATGTAGATAAATTAGAATCAGATTTGTTACTAGTCAAAAGATCTCTGcgaaatcatttgaaaaagaaatatggaCTGAATGATGACATTAAAGAGACTGAAAcagtaaaagttgaaaatgaagttgaaatgGAATACACCTTTGTTCAGGATGTCGAATCTGAGGAGGATCATGAGCCACAGTCAAAGAAACCAAAGCAGTCACGACCGGTTCGCTTCCGTGCCATCAAGCCGAAGCCTCCGGGATCAGTTCAGTTGCTCAAATGCCCCTCCTGTAACTTTATAACCACCGAACCTGACCTTCTATCTTGTCACCGCGTCGTCTGTACTGCCATGGCGTACAAGTGCACCATGTGCGATAAAAAATTCGACAGTCAGAAAATGATCAGGAATCACAAGATAGAGGCACATCTGACGAAATGGATCTGCCACTTCTGTAACATTAGttttaatgaagaaaagaaatttacgcTTCACATGAAAAACCACTTAGGTGAtagattaaataataaaacggttaaaattaaaacggatgaaggaaaaaaggagaaagtgaCTCTGAGTTTTAAGTGTCCCCACTGTCCGGAAAGTTTCGAGGCTTTCAGTCAGCTTCAAATTCATTTAGTTAACCACACTAGTTCGGTGACGTTTCGATGTGTGAGGTGCGATATCGGGTTTCAAAACAAGCTGGAATTGATAGAACACGTAAAGACACATGACGAGGGCACTCCAGAGGAGTACATCCTCCCAGGAAGCCCCGAAGAGGGCAAGGAAACAGCTGAAACATTGTACTCGTGTTCCGAATGTTCGATCAACTTTATACAAGAGGATTTGTACCTTCGACACTTGAGCATGCATCAAGAAATGGAACCAGTGGAACAGACGGAACAGTCAGACATGAACCTGTTCCccgaagaaggagaaaaaaacgcatcgaaacctgaaaaagaagaattcgaATGTCCGAATTGcggagagaaaaaggaagattCTGAAACTTTGGAAATGCATCGTTTAACTGAGTGTTTGGGTTTGGAGAAGAAGACAGTTAACGAAGTGAAAGATGTTAGCGAATCAGAGTATCAGGAAAACGCAGGTGAGGAGGCTTCACATCttgaattaaatcaattgCTCTATGTTAATTCGCTAAACGTTCAGTTAGTCGATGGAAATGTTGTGTTTCAAAATGCAACAGATGCCAAGGGGGAGATTGAAAATAGCGAAAACGATGCGAACGCGAACAGTAAATCAGTTGAAGACATTCTTGAAAACATGTTTCAGGTGAAGGATGAAGATAGTGGGAAAATGGGAGAAGAGGCAGAGGGTGAAGTGCCCGAAAACGAACTTCAAGTTAGTGATTTAAAGCAGGGGAAAAACAAGACTTTCATGTGTGCCGTGTGCTCGTTTGCCACGCAAAACCTGGGCGCGTTGAAGAAACACTTCGTCGAAGCACACGAGGCCTTTAAGTGTTGGATATGCAAAAAGGATTTTCAAATGGAAGACCTGAGGAAGCATCTTGCCGAAGAGCACGGAACGAGCACCGTGTCCGTGCAATCGAAGACCTACAATTGCGTCCACTGCTCGGAGAAATTCACAAATAGAAGAGCCCTGCACTTGCACGAGGTGAAACATCCTGAAAACCTGAACATTCAATGTCCGGACTGTGGGGAAAAGTTTGCAAGAGACAAGTTTTTAAATGAGCACAGGGAAGCAGCACACACGGTGGCACATTGCCGTGTCTGCAACAAGTCCTTTGGAAATGTGAAACAGCTGAAGTCTCACGAGGCACGCCATGCCAAAAGTGATAAGACTCAGTTTAAATGCACCGACTGCGATAGGATATTTCAAACACCCACCGGACTGCGTCACCACAAAGCCATTCACACGGGAGaattcaaatacaaatgtgAATTCTGTGGGAAAGGATTCGTAGCCAGAGTCCGCTACGAGGAGCACAGGGCTTCCCATACCAAAGAGGAACGATATTCTTGCGAAATTTGCGGcaagaagttttcttttcaggcCACATACTGGATTCATAGAAAGTGGCACGACAATCCAACGCCGTACAAATGCGAATATTGTGGAAGGTTGTTCAAGCACTCTTCCTTGCTCTCCGTCCACAAGAGGAAGCACACTGGTGAACGTCCCTACGAATGTCCACACTGTGACCAGTCCTTCACGGTTGGAAACACCCTCAAACGTCACCTAATGCTTCACACGGGACTTTTCCCGTTTACGTGTCAAATCTGCGACCAGGGATTCTCTGGCAAGCACAAGATGGCCTTGCACATGAGTAAAGTCCATCAGGACAATTCGCTGTTGGAGCAGCAGTCTCAAAAGAAACCATCCGAGTATAAGATGGTTGTAAAGCAAGAGCCGGAAAAAACAGAGACCGTCACAGAAGAGACGGATCAAAGTCAGCAAAATCAAACGTGGATTCTGACCGAGAATGACAACAATCGATCGCAAATGCTCACGATTCAAACGGCAGAAGGTGAAAATATTCCGTGTACTCTACTAACGGACGACATAATCGGAAACATAGTTAATACGGACAACAGAATCGTGGAGATAATTCCGTATGATACGATCAAAGCCGAAAGCGTCGAGGACGGAAACGAAGTAGGATTCATATTGATGAATCAAACTGATCGGTCTAATCTAGGCATGATCAGCGAGGACGAGACTTTCATAGACCAGTCACAGGTGTTTAACGGTGAATGCTTGAAAAAGGACGAGGTCGAAACGGTGATTCCTCAAAGCACTCAGATGAAGCATATTGTTTACAGCAAAGGGGAAAATGGCCCACAAGAAACAAATGTTGAATCAAGCGAAAACATGGTCCAAGGATTTGCATCCTGA
Protein Sequence: MKTTSGDLRTLKPILPKLNPVVTRVIEINAPAMQMCKCFVCDERVISSGVPLLQSTTQVSNTDLPTKIGQLMGEKFMVVVSADDVLCRKCHALVNHVDKLESDLLLVKRSLRNHLKKKYGLNDDIKETETVKVENEVEMEYTFVQDVESEEDHEPQSKKPKQSRPVRFRAIKPKPPGSVQLLKCPSCNFITTEPDLLSCHRVVCTAMAYKCTMCDKKFDSQKMIRNHKIEAHLTKWICHFCNISFNEEKKFTLHMKNHLGDRLNNKTVKIKTDEGKKEKVTLSFKCPHCPESFEAFSQLQIHLVNHTSSVTFRCVRCDIGFQNKLELIEHVKTHDEGTPEEYILPGSPEEGKETAETLYSCSECSINFIQEDLYLRHLSMHQEMEPVEQTEQSDMNLFPEEGEKNASKPEKEEFECPNCGEKKEDSETLEMHRLTECLGLEKKTVNEVKDVSESEYQENAGEEASHLELNQLLYVNSLNVQLVDGNVVFQNATDAKGEIENSENDANANSKSVEDILENMFQVKDEDSGKMGEEAEGEVPENELQVSDLKQGKNKTFMCAVCSFATQNLGALKKHFVEAHEAFKCWICKKDFQMEDLRKHLAEEHGTSTVSVQSKTYNCVHCSEKFTNRRALHLHEVKHPENLNIQCPDCGEKFARDKFLNEHREAAHTVAHCRVCNKSFGNVKQLKSHEARHAKSDKTQFKCTDCDRIFQTPTGLRHHKAIHTGEFKYKCEFCGKGFVARVRYEEHRASHTKEERYSCEICGKKFSFQATYWIHRKWHDNPTPYKCEYCGRLFKHSSLLSVHKRKHTGERPYECPHCDQSFTVGNTLKRHLMLHTGLFPFTCQICDQGFSGKHKMALHMSKVHQDNSLLEQQSQKKPSEYKMVVKQEPEKTETVTEETDQSQQNQTWILTENDNNRSQMLTIQTAEGENIPCTLLTDDIIGNIVNTDNRIVEIIPYDTIKAESVEDGNEVGFILMNQTDRSNLGMISEDETFIDQSQVFNGECLKKDEVETVIPQSTQMKHIVYSKGENGPQETNVESSENMVQGFAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -