Pser006906.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- ZNF212
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000036.1:14321910-14324974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00037 0.022 14.7 0.7 1 23 61 84 61 84 0.94 2 22 0.014 0.79 9.8 3.9 1 23 88 111 88 111 0.95 3 22 0.023 1.3 9.0 0.6 1 23 116 139 116 139 0.95 4 22 0.0055 0.32 11.0 0.7 3 23 175 196 173 196 0.93 5 22 0.00067 0.039 13.9 0.9 2 23 201 223 200 223 0.95 6 22 0.00047 0.027 14.4 1.0 3 23 230 250 229 250 0.96 7 22 0.0017 0.098 12.6 0.3 2 23 257 278 256 278 0.96 8 22 1.7e-05 0.00097 18.9 0.5 1 23 284 307 284 307 0.98 9 22 1.8 1e+02 3.1 3.4 2 23 316 337 315 337 0.96 10 22 0.076 4.4 7.4 0.1 1 23 344 366 344 366 0.93 11 22 7.3e-05 0.0042 16.9 2.5 1 23 372 394 372 394 0.97 12 22 5.7e-06 0.00033 20.4 0.8 1 23 400 422 400 422 0.98 13 22 0.059 3.4 7.8 0.3 2 23 455 475 454 475 0.95 14 22 0.22 13 5.9 4.4 1 23 482 505 482 505 0.91 15 22 0.0001 0.0061 16.4 3.7 3 23 511 531 509 531 0.96 16 22 0.96 56 3.9 0.1 1 23 537 560 537 560 0.78 17 22 0.045 2.6 8.1 0.6 2 23 568 589 567 589 0.96 18 22 0.047 2.7 8.1 3.4 1 23 595 618 595 618 0.95 19 22 0.0026 0.15 12.0 1.4 1 22 627 648 627 650 0.89 20 22 1.4e-05 0.00083 19.1 0.7 3 23 658 678 657 678 0.97 21 22 0.0004 0.023 14.6 4.4 2 23 685 706 684 706 0.97 22 22 0.00013 0.0078 16.1 1.6 1 23 712 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGAGTATCCCTAATATATCAAATTCACATCAAAATTTTACCTCCATGTGCACCTATTCAGTTAATAAAACATCAACTTGGCATCCAATCACCAAGGAACCTGAACAAGACGACGACTCATCATTGGCGACGCTGCGGAAGATTTGGAAATCCAATAGTgtaattcaaaagaaaatcgGCTTTCCTTGTCTCACGTGTGGAGAGAATTTCAGTAAGAAATCCAAATTAGTTCAGCATGGGTACACGAGTCATGACCACGGTTTCAAGTGCAAAATCTGCTCCCGAATGTTTTCCAACTTTTCGGCCTGCTTAGTTCACCTAACCACAAAACATTCCGGGCAAGGGTATCCGTGCGGCGAGTGtgattttaaaactattaagcgGATGAAACTTAAGAATCATGTCATGGAGAAACATCGAAATCGTTTTAAGCTGAACGTCAAAAGGGGCAAAGAAGATGGTGAAAACGGAGTCATAACGCCGAGTGGTAAGAGAACTGTAACGGAAAAGGAAACTCTTGCCTGTGACCTTTGTGACATGATGTTCACTCTGAAAAGTCGGCTACTGAAGCACAAGAATGAGAAACATGGAATAGACATAAAATGCGAAATATGTTCTCAGGTATTTAGCAGTATGGTCTCACTTAGAAGTCATAAGTTTACGAAGCATACAGGCAAAGACAAAATATGCGAAATATGCGGCTATTCCACAAAGAAAACCTACGACTTTAAAAGGCACCAGGTTAAGCATAGCAACGAATATACGGTCATGTGTCTCGTCTGCAATAAAGGTTTCTACTCACTATATGAGTTCAACGAGCACAAGAACGTCCACACTGCTGAAAGACCGTATCAGTGTGAAGTTTGTGGAGTGGACTACAGTCGCAGAAGTTCCCTGATACTTCACAGAAATCGGAAGCACCCCGAGATCTACGACTCTTCCAAACGCTGCCAGATATGCAATCACGTTTGCCTGAAGAAGGAGACCATGGAGGCCCACGTGAAAGTACACATGGAGGGCAGGAAACAGTATTATTGTGACATTTGCGGAAAGGGCCTACTCACAAAAGTAATTCTAGAAATACACAGGAGAAGTCACACAGGAGAAAAACCGTTTGATTGTAGCTATTGTGGAAGAGCCTTTAGTTGCAAGAAAAACCTTTCGATTCACATTCGTTTGCACACAGGCGACAGACCCTATTCTTGTAATGTATGTTGGAAAGCCTACACAAAAAGCTCGGCTTTGAAATCTCATGAGAAGACTCATGCTGCTCGCCATCCTGTGACaatcgGCAGAAAAGTAATATCACAGACTAAAAATTGTGATGTAACTCGGAAACACAAAATCTCAACCGAAAAGTTACCATGCAATATATGTGGAcagcaatacataaaaagcgTTCTCGATAGACATACGAGAAGACATCGAGAGGCAAGTGCTCATCATAAGTGCGATCTCTGTCGTAAGTCCTTTACAATGCtgacaaaactaatttttcataagaaaaaaGAGCACGGGGTGACTATGCACTGCAACGAATGCGACAAAACCTTCCAAAACATATATACATTCACATCACACATGAGAAATCACAAGAAGGAAAGGTCATTTGTTTGTGATATTTGCGGTTTTGCTACAAtcggaaaatcaattttgggCAGCCACAAACTTGTGAAACACCAGATCGGTCAGTTTCCGCTGCGATGCAGGATCTGCCAGAAAGGGTTCCTTAGcaattacattttgaatgaTCACATGAATAGTCACACCGGGGCAAAGCCCCACCAGTGCCATAAATGTGGGTCAGCCTACGCCACCGTCAGATCATTAAAAGGCCACTACTACAAGATGCATCCAGAACTAGACAACAACAAGATTTTTCGCTGTAACAGTTGCAGTCGTGTGTtcaaaagcaagaaaaagTTGGATGTTCACGAGGCAGAGAAACATGCCAATGGAGGAGGCAACATTTGTGACTTTTGCGGGAAAGACTTCTCATTTCGAGAGTCTTTGGTGCGTCATAGGCGAATTCACACTGGGGAAAAACCGAAGGAATGCACGGTATGTAAAAAGAGGTTTTCGTGCGCCACTTACCTTCAGAGTCACATGCGAACGCACACTGGGGAGAAACCATACCAATGTAGATTCTGCTGGAAGAAGTTCAGTCAAAGATCCAGCGTTGTAGCGCATGAAAAATCTCACTTGAGGGGACTCGAGTCATCGGGAATAGAAATGGTTACTGTTACATCTGAAAATCAACCGAAATGA
- Protein Sequence
- MSIPNISNSHQNFTSMCTYSVNKTSTWHPITKEPEQDDDSSLATLRKIWKSNSVIQKKIGFPCLTCGENFSKKSKLVQHGYTSHDHGFKCKICSRMFSNFSACLVHLTTKHSGQGYPCGECDFKTIKRMKLKNHVMEKHRNRFKLNVKRGKEDGENGVITPSGKRTVTEKETLACDLCDMMFTLKSRLLKHKNEKHGIDIKCEICSQVFSSMVSLRSHKFTKHTGKDKICEICGYSTKKTYDFKRHQVKHSNEYTVMCLVCNKGFYSLYEFNEHKNVHTAERPYQCEVCGVDYSRRSSLILHRNRKHPEIYDSSKRCQICNHVCLKKETMEAHVKVHMEGRKQYYCDICGKGLLTKVILEIHRRSHTGEKPFDCSYCGRAFSCKKNLSIHIRLHTGDRPYSCNVCWKAYTKSSALKSHEKTHAARHPVTIGRKVISQTKNCDVTRKHKISTEKLPCNICGQQYIKSVLDRHTRRHREASAHHKCDLCRKSFTMLTKLIFHKKKEHGVTMHCNECDKTFQNIYTFTSHMRNHKKERSFVCDICGFATIGKSILGSHKLVKHQIGQFPLRCRICQKGFLSNYILNDHMNSHTGAKPHQCHKCGSAYATVRSLKGHYYKMHPELDNNKIFRCNSCSRVFKSKKKLDVHEAEKHANGGGNICDFCGKDFSFRESLVRHRRIHTGEKPKECTVCKKRFSCATYLQSHMRTHTGEKPYQCRFCWKKFSQRSSVVAHEKSHLRGLESSGIEMVTVTSENQPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -