Pser009209.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000039.1:1740161-1742873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00021 0.012 15.5 2.4 2 23 171 192 170 193 0.94 2 17 0.0016 0.095 12.7 1.1 2 23 199 221 198 221 0.95 3 17 0.0011 0.062 13.2 0.5 2 23 228 249 227 249 0.96 4 17 1.9e-05 0.0011 18.7 2.7 1 23 255 277 255 278 0.95 5 17 1.4e-05 0.00084 19.1 1.6 1 23 285 307 285 307 0.98 6 17 8.2e-05 0.0048 16.8 2.1 1 23 313 336 313 336 0.97 7 17 3.6e-05 0.0021 17.9 3.8 1 23 342 365 342 365 0.94 8 17 0.015 0.85 9.7 1.1 2 20 373 391 372 393 0.92 9 17 1.7 98 3.2 2.7 1 23 484 507 484 507 0.86 10 17 0.017 0.96 9.5 2.4 2 23 512 533 511 533 0.96 11 17 1.2e-05 0.00071 19.3 1.9 1 23 539 561 539 561 0.98 12 17 2.6e-07 1.5e-05 24.6 0.9 2 23 568 589 567 589 0.96 13 17 0.035 2.1 8.5 5.1 1 23 595 617 595 617 0.96 14 17 8e-07 4.7e-05 23.1 2.0 1 23 623 645 623 645 0.97 15 17 0.001 0.059 13.3 2.4 1 23 651 674 651 674 0.97 16 17 1.4e-05 0.00084 19.1 0.9 1 23 680 702 680 702 0.99 17 17 0.18 11 6.2 1.2 1 21 708 728 708 729 0.92
Sequence Information
- Coding Sequence
- ATGTCCTCACCGATGTTGATGCAGACAGGAGCGATAGACATGTTCGAATTGGAACAAACCGAGTTAAAAAATGTCGGAACGGAAACGAGCGAAAACATCGGTTTAGAAAATGGTGGCATTGAAGAAGACCTGGACAATTCACTAGACGAAAGCACGACAGCCAAAGTACCGAAATCAAGTTCTGATAGAGACTTCTCCTCGGATGACGACCTAACGCTCTCAGTACAAAAGCAACAAATTCTTGAGGAGAAGAACAAAACAGGCAGaataaagcaaaagaaaaagacttcTCTGAAAGCAGGACAGGAAACCATTAGACAAGTGAGGACGGTACAAACGCAGACATGCGTTGAGGATGATGATGCTTTTGAAGTTGTGGTAACGGGATTCTGTGAAAGTTCGGCTGCAACGATGGTCGATAGGCGAAAACTCAGAAGTCGGAAGACCCAAACTCCAAAGGGACAGAGTTCGTCGAAGAAAAGGTTTCGCATCCGACCAGCAGTGCCGAGTTCGTGTACTCTGTGCGACAAAGTTTACAAGAACAGTGAAATTCTCAGGCAGCACATGAAGAGTCACCACGTCTCAGGCACCATCGAGTGTCCCAGTTGCAAGCTGACGTTCACTTCTCTAAGAAGCTTAAAATACCACGAGCAAAGGAAGCACAGCAACCTGGAACCCGTGCCGTGCACCTTCTGCGGTAAGAAGTTCCTCGACAAGAAGTACTTGAGAATACACGAGAACATTCACAGTCAAGCGAATCACTTCGTCTGTCAGTTTTGCGGACGGAAGTTCATAATGAAAACGAATTTGACCGTTCACATAAGTCGACATCACACAAAGAAATCGAACGACTTCATATGCCAAATTTGCGGGAAAGCGTTTCCCTTCAAACTGTACCtgaagaaacattttaaaacgcACACGGACTACAAGCCGTACCAGTGCAACCATTGCGAGGCGAAATTTCGAGAGAACACCCTCCTGCGGAAACATGTCAACAGCATTCATTTGAAACTGAGACCTTTTCTCTGCCAGTATTGTCACAAAACATTCACGAGGAGCCTCTACCTCAGAGAGCACATGGAATCTCAACACTTGGGCATACAGAGGAAAGTGGAATGTTCGAGGTGCGGAGAAAGCTTTCAGAACAGGAATCGATTAAGACAACATGAGTGTATGGGAAGAATGGAAATTGCGATAGGTAAGAAAAAGAGGAGACAGAATATACAAAACCTTTTaggagaagaacaaaatgtCGTCCAGACAGGAAATCTCAAAAGTTGGACGTTTCCTGGCTATAATTTTTGGGCGGGTGACGAGAACGCCGAAGGAGCGACAACAAGCGAGGCAAATCGTGCAAGTTCGACCGGAGATGTGAAGacaaaacggaaattgaaCTACACGGATGTGACGTACGACCACCCGGTGCCGAGGAAGGACGGGAAAGTTCACCAGTGTAGAATATGTCAGAAATACCTGAGGAATGTGACGACGAGGAATCGTCACGAACTGGAGAAACATCCGCCCCCGCTGCCCTGCGAATTCTGTTCGAAGACGTTCACGACGGTTCTGACGTACCACACGCATCGGAACATCCACCTCGGACTGACCAAATACAAGTGCAAATACTGCGGTAAGCACCTGGGCTCCCGATCGAATTTGGAGGATCACGAAAAGGTTCACACGGGAGAGAGGCCGGTGGAATGTCCGAAGTGCGACAAAACCTTTTCCTCGACGTCGAATCTCAGGGTCCACCTCAAGTTTCACGCCGGCGTGAAAACCCACTTCTGTCACATCTGTGGAAAGGGTCACGTGACCACGGGAAACCTGAAACTCCACGTGAAAAGGCACTCGAACGAACGGAGTCACGTCTGCCACATCTGCGGAAAAGGTTTCAATGGTAGGAGCGAACTGAAGAAACACATAGAAAGTCACAACGCCGAGAAAAACTACTCGTGTCAGTATTGTACGCAAAAGTTGAAGACGTACAACTCGCTCAAAAGACACGTCAACATTCAGCATTTGAAAGTCAGGCCGTACAAGTGTGACTTTTGCCTGAGGGAATTTGGAAGGAGAGAAAACCTGAAGGAACACATGCAGGTGCACCTTCTAAAAAAGGAATTCTTCTGCGAGGCATGCAGCAAACAGTTTGCGAATTTGAAAGTCCTTCAGAGTCACAGGTGTGTTTTGACCGGAAACGGTTAG
- Protein Sequence
- MSSPMLMQTGAIDMFELEQTELKNVGTETSENIGLENGGIEEDLDNSLDESTTAKVPKSSSDRDFSSDDDLTLSVQKQQILEEKNKTGRIKQKKKTSLKAGQETIRQVRTVQTQTCVEDDDAFEVVVTGFCESSAATMVDRRKLRSRKTQTPKGQSSSKKRFRIRPAVPSSCTLCDKVYKNSEILRQHMKSHHVSGTIECPSCKLTFTSLRSLKYHEQRKHSNLEPVPCTFCGKKFLDKKYLRIHENIHSQANHFVCQFCGRKFIMKTNLTVHISRHHTKKSNDFICQICGKAFPFKLYLKKHFKTHTDYKPYQCNHCEAKFRENTLLRKHVNSIHLKLRPFLCQYCHKTFTRSLYLREHMESQHLGIQRKVECSRCGESFQNRNRLRQHECMGRMEIAIGKKKRRQNIQNLLGEEQNVVQTGNLKSWTFPGYNFWAGDENAEGATTSEANRASSTGDVKTKRKLNYTDVTYDHPVPRKDGKVHQCRICQKYLRNVTTRNRHELEKHPPPLPCEFCSKTFTTVLTYHTHRNIHLGLTKYKCKYCGKHLGSRSNLEDHEKVHTGERPVECPKCDKTFSSTSNLRVHLKFHAGVKTHFCHICGKGHVTTGNLKLHVKRHSNERSHVCHICGKGFNGRSELKKHIESHNAEKNYSCQYCTQKLKTYNSLKRHVNIQHLKVRPYKCDFCLREFGRRENLKEHMQVHLLKKEFFCEACSKQFANLKVLQSHRCVLTGNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -