Pser005479.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000009.1:682827-686303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0002 0.011 15.6 0.6 3 23 121 141 119 141 0.96 2 22 0.001 0.059 13.3 4.6 1 20 201 220 201 223 0.96 3 22 0.0036 0.21 11.6 1.4 2 21 229 248 228 249 0.93 4 22 0.0068 0.39 10.7 1.0 1 23 256 279 256 279 0.95 5 22 0.016 0.95 9.5 0.8 2 23 318 340 317 340 0.94 6 22 0.001 0.058 13.3 1.3 1 23 365 388 365 388 0.96 7 22 0.033 1.9 8.5 0.1 1 23 419 441 419 441 0.95 8 22 8.2e-05 0.0048 16.7 2.9 3 23 456 476 454 476 0.95 9 22 6.7e-06 0.00039 20.2 2.3 1 23 482 504 482 504 0.98 10 22 0.00041 0.024 14.6 4.2 1 21 510 530 510 531 0.95 11 22 0.00057 0.033 14.1 1.0 1 21 538 558 538 559 0.94 12 22 0.0075 0.44 10.6 1.7 1 23 618 640 618 640 0.96 13 22 2.8e-05 0.0016 18.2 0.8 1 23 646 668 646 668 0.98 14 22 0.02 1.2 9.2 0.2 1 21 674 694 674 695 0.93 15 22 1.7 1e+02 3.2 2.1 1 20 702 721 702 723 0.91 16 22 0.0085 0.49 10.4 1.0 1 23 753 775 753 775 0.97 17 22 1.2e-06 7e-05 22.5 3.6 1 23 781 803 781 803 0.98 18 22 0.018 1 9.4 0.0 3 23 833 854 832 854 0.97 19 22 0.00041 0.024 14.6 0.6 3 23 875 896 874 896 0.98 20 22 9.2e-05 0.0053 16.6 1.4 1 23 907 929 907 929 0.97 21 22 3.3e-05 0.0019 18.0 4.0 2 23 936 957 935 957 0.97 22 22 0.002 0.11 12.4 1.0 1 19 963 981 963 984 0.94
Sequence Information
- Coding Sequence
- ATGTTGATCATGGAAGTTGAGGGTGATCCATTAATGCTGAGCGATCCGCTCGATTGCAAGGCAATTGAACTGAACAACGTGGACGTTTCCCCCAAATGGTCCTTGGAACCCGAAACCGAAATGATTTTCGATGTTTCGTCTAAACATTCTGAAGACGGTCTCGGAATTGTAAGCGatgaaaaaaggtttcgagGGAGAAAGGGGCAGAAGGTTAACTTCGAAGATGCGGACTGGAATTGTTCTGTTAAACGAAGGGTTGCCAGCAGAAGAAAGCAAAGGTCGAAGGATGTAAGAAAGCAACTGGCGCTCAATGAAGCAGATACGCAAAAGGTTAGCTGTAGCAGCGGAGAAAATTTCGGGTGTAACTTGTGCGACAGAACATTCGACACGACGTCTGATCTCAAAGAACATGTGTCGAACCACAAGAAGAGTTTTACTTGTGGAAAGTGTACGACTTTTAGAAACCCAAAAAGCTACGAAAATAATGCCCGTTTTGAACGAGAATTGGGTGAGACGGAACCAAGTGACGGCATTGGGAAAACTGCTGGAGAGAGACAGGAGAGCAAAAAATACTGCGAGCACTTAAAATCGGAGAGAAAGTACCGTTGTCAATTATGTCAGAAAACGTTTATTACGGTCGGTCATTTGAACACACACATGTACTGTCACTCTGATAAAAAGTGGAAATGTGACGGTTGCGGGAAGAATTTTTCTTGCGAGAGAAGTTTGACTCGTCACCGAGAAACATTTCCAGGAGAGCATTGGTTTCCCTGTCAGCATTGCGACATGAATTTTTTCCGAGTAGGAAACATACTCAAGCATTTGGAAGTCAAACATCCGGAGGCTTCGCTGGAGGCAATGCGCACTGGAGAATTACACTTTACTTATGTCACCAACATAAACAACCGTGAtacagaaaacgaaaattctGTCACGGAGAGAAAACTTTGCATTTGCACGAAATGTCTCGATGTTTTCAGGAGTTCTGATGCTTTGCAGGCCCACAAGGAGACCGTTCATGCATTCGTGGATCAACAAGAAAGCGAGCAGAATACTAGTCAAGAGGAGAATAATGCGGATCAGGTACCCAGGTTTAGATGTGAGATTTGTTTCAAAGAGTTCGTCAGTTCTGAGGGTTTCGAGTATCACAGAAAAAATCAACACGGTGCCCagtcgaaagaaaagaaaatgcggAACAAAGGTGAATTAACGGTCGTGAGCCGAGAAGACGAGAACGGTGATGTAGTTGAGAACTTTTTGTGCAGAGTTTGCTCGGAAAGTTTCCCAGCGAAAGAAGTCCTTCAGGAACATGTCAAATCGCACAACCGAAGCAAACCAACGGAAGGCAAACCGGCTGCTCATCTTTGCTGTATCTGTCCGAAGTCGTTTACCAGCAGTGACGGACTGAAATACCATCTGGCAACTCACACGGGTGAAAAACGTTACTCGTGTTCAATATGCGGTAAAAAGTTCATTAAGAAAACTCATCTGTTCGAGCACGTAGCGACACATTCACAGGAAAAGTTCTTCAAATGTTCCCGGTGTCCCCGAACCTTCAGCACTCATTCGGCCTACAGGAAACACGTGAAACATTTCCCGGGTCCTCACTCGTTTTCCTGCGTGAAATGCGGCAAATTGTTCACGAAGGAGTCCATGCTGGAGAAACATGTGTGCGTGGATTTGGTGAATGTGACGATGGCGCCAGAGGTGAAAGCGTTATTAACGGAAAATCCTAAAGAAACGTCCATCCGGCAACCAGAGGTGGTAGAACAGACAGAAACGAAAGCAACCGTGACCCGTAGCAGTGTTCGTGTAAGTTCAGATGTGAGTGGCTCTACCGAAAACGGTCCTCATTCTTGTTACAAATGCTTTAATGTCTTTCCCAGTCTGGAAGAGCTGCAAACTCACCAAAACGAACATGTCGGTAAACAGCACTACCAGTGTCGGTTCTGTCCGGAGATGTTCAAACGAGCGGACGATTTTAGCACTCATATTCGCGATCACTTGGGCAGTAGTCCCTACATGTGTTTAAAATGCAATCGAAAGTTCATATCTCCGTTGACGTTAGCGTTACACGCGAAGAAATACCCGGGAGAACACTCGTTTACGTGTAAGAAATGTCAGAGATGGTTTCCAAGCGAAAAAAGACTCGACAGGCACGAGTGCATGCTGCAGAACTCAGATGAGTTCACGTGTGCGTGCAGAGCCTCCATAAAGAGCTGGAAGGAGTTCGTGGAACACGCGGGTACCAAGCCGTACGCCTGCTGTTCCTGTAACGTCAGGTACCCGACGTTGATCGCGCTCATGAGACACATCAAGAAGCATACAGGAGTGAAGCCATTTTCTTGTGAGGAGTGTGGAAAATCGTTTAGGTCAAAAAGCAATTATTTACATCACAAAAACATTCACTTGGAAGTTAAGGAACTCTACTGCGAGCACTGttcttttaaaagtaaatccAAAAAACGAATGGATTTTCATCTGTTCAGCACGCTTTGTCCTGTGTGCGGAATTAATTTTCCGTACCTGTTGCAAGCGAAAAAGCACATAGAAACAGAACATCCCGGGGAGCTTATTTTAGAACGATCTTCCGGGGAGAAAAAGGCTGTATCGGTGGTTCTGTGCACTCTCTGCGGAAAACTACTAAGCAACAAGTACATGTTGGCGAATCACATGAAAAAAGTTCACGATCCGGACGCTCCCAAAAATGTTCCAGAGTACACATGTGACGTGTGCCATGGTAAATTCCGCAGTCAAAAACAATTGGAAAGACACGCGGAAGTACACGAAGCTCCGAGCTTGAGTACCTGCGAAATTTGCAACAAAcagtttcattttgcaaaGGATTTAAGGAAGCACATGAGACGGCACGACATGAATAAACCTTTTTCGTGTTTCAAATGcggcaaaaattttaaagtttccgTCAGTCTCAAGTATCATTCAACCATTTGCGAAAAAGGACAAGGCGGAGGTCGAATTTCAAGTGTGGCAAAGCGAAAAAAAGAAGTCGTCGGTAGCACTGAAATCGATGGAAATATTTACGTCGGTCACATTGACCCGACCAATCTCAAGTACCCATCCTACACCATCTCatttagttga
- Protein Sequence
- MLIMEVEGDPLMLSDPLDCKAIELNNVDVSPKWSLEPETEMIFDVSSKHSEDGLGIVSDEKRFRGRKGQKVNFEDADWNCSVKRRVASRRKQRSKDVRKQLALNEADTQKVSCSSGENFGCNLCDRTFDTTSDLKEHVSNHKKSFTCGKCTTFRNPKSYENNARFERELGETEPSDGIGKTAGERQESKKYCEHLKSERKYRCQLCQKTFITVGHLNTHMYCHSDKKWKCDGCGKNFSCERSLTRHRETFPGEHWFPCQHCDMNFFRVGNILKHLEVKHPEASLEAMRTGELHFTYVTNINNRDTENENSVTERKLCICTKCLDVFRSSDALQAHKETVHAFVDQQESEQNTSQEENNADQVPRFRCEICFKEFVSSEGFEYHRKNQHGAQSKEKKMRNKGELTVVSREDENGDVVENFLCRVCSESFPAKEVLQEHVKSHNRSKPTEGKPAAHLCCICPKSFTSSDGLKYHLATHTGEKRYSCSICGKKFIKKTHLFEHVATHSQEKFFKCSRCPRTFSTHSAYRKHVKHFPGPHSFSCVKCGKLFTKESMLEKHVCVDLVNVTMAPEVKALLTENPKETSIRQPEVVEQTETKATVTRSSVRVSSDVSGSTENGPHSCYKCFNVFPSLEELQTHQNEHVGKQHYQCRFCPEMFKRADDFSTHIRDHLGSSPYMCLKCNRKFISPLTLALHAKKYPGEHSFTCKKCQRWFPSEKRLDRHECMLQNSDEFTCACRASIKSWKEFVEHAGTKPYACCSCNVRYPTLIALMRHIKKHTGVKPFSCEECGKSFRSKSNYLHHKNIHLEVKELYCEHCSFKSKSKKRMDFHLFSTLCPVCGINFPYLLQAKKHIETEHPGELILERSSGEKKAVSVVLCTLCGKLLSNKYMLANHMKKVHDPDAPKNVPEYTCDVCHGKFRSQKQLERHAEVHEAPSLSTCEICNKQFHFAKDLRKHMRRHDMNKPFSCFKCGKNFKVSVSLKYHSTICEKGQGGGRISSVAKRKKEVVGSTEIDGNIYVGHIDPTNLKYPSYTISFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -