Pser006918.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- Trmt13
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000036.1:14361486-14368345[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 37 1.4 80 3.5 4.5 3 23 455 475 453 475 0.97 2 37 0.053 3.1 7.9 1.1 1 23 496 518 496 518 0.97 3 37 0.014 0.84 9.7 0.6 1 23 524 547 524 547 0.91 4 37 4.2e-06 0.00025 20.8 1.6 2 23 561 582 560 582 0.97 5 37 0.00022 0.013 15.4 0.9 1 23 588 611 588 611 0.94 6 37 0.00036 0.021 14.7 0.5 1 23 617 639 617 639 0.97 7 37 0.0011 0.065 13.2 2.0 1 23 645 667 645 667 0.97 8 37 3.4e-05 0.002 17.9 2.3 1 23 673 696 673 696 0.97 9 37 0.0066 0.38 10.8 2.2 2 23 705 726 704 726 0.96 10 37 6.3e-05 0.0037 17.1 3.5 1 23 731 753 731 753 0.99 11 37 1.1e-05 0.00066 19.4 1.3 2 23 759 780 758 780 0.96 12 37 0.009 0.52 10.3 0.3 1 23 810 832 810 832 0.97 13 37 0.026 1.5 8.9 2.9 1 23 851 873 851 873 0.99 14 37 2.2 1.3e+02 2.8 4.5 1 23 903 925 903 925 0.92 15 37 1.4e-05 0.00083 19.1 2.9 1 23 930 953 930 953 0.98 16 37 9.4e-05 0.0055 16.6 0.2 1 23 960 983 960 983 0.97 17 37 2.4 1.4e+02 2.7 0.6 2 23 1010 1031 1009 1031 0.95 18 37 0.17 9.7 6.3 5.9 2 23 1039 1061 1038 1061 0.91 19 37 0.085 4.9 7.3 4.4 1 23 1108 1132 1108 1132 0.97 20 37 0.00017 0.01 15.7 0.4 1 23 1136 1158 1136 1158 0.98 21 37 0.0013 0.075 13.0 5.1 1 23 1163 1186 1163 1186 0.97 22 37 0.00013 0.0078 16.1 0.4 1 23 1193 1216 1193 1216 0.96 23 37 0.16 9.2 6.4 0.3 2 23 1223 1243 1222 1243 0.95 24 37 0.0021 0.12 12.3 1.9 1 23 1248 1270 1248 1270 0.97 25 37 9e-06 0.00053 19.8 1.8 1 23 1276 1298 1276 1298 0.99 26 37 0.0085 0.5 10.4 5.5 1 23 1304 1328 1304 1328 0.93 27 37 1.7e-05 0.00099 18.9 0.8 2 23 1469 1490 1468 1490 0.97 28 37 0.088 5.1 7.2 0.6 1 23 1496 1518 1496 1518 0.96 29 37 9.6e-05 0.0056 16.5 2.6 1 23 1524 1546 1524 1546 0.97 30 37 1.2 72 3.6 1.6 2 23 1553 1574 1552 1574 0.95 31 37 0.00022 0.013 15.4 0.6 1 23 1580 1602 1580 1602 0.98 32 37 0.0014 0.084 12.8 0.4 1 23 1608 1631 1608 1631 0.94 33 37 3.3 1.9e+02 2.3 0.2 3 23 1643 1664 1641 1664 0.83 34 37 1.4e-05 0.00079 19.2 1.4 1 23 1670 1692 1670 1692 0.98 35 37 0.00014 0.0081 16.0 1.2 1 23 1698 1720 1698 1720 0.98 36 37 6.4e-07 3.7e-05 23.4 3.7 1 23 1726 1748 1726 1748 0.98 37 37 6e-06 0.00035 20.3 2.9 2 23 1755 1776 1754 1776 0.97
Sequence Information
- Coding Sequence
- ATGGCACCAAAGGcgggaaaaaagttttgcgtGGAACATGGTGGAGTGGAAAGGCACGTCTCTGTCGAGGATGCTGAGGAAGAAGGCGACAGGATGCCGTGTCCGTATGATTCGAAGCATTCCTGTTACGTGAAGAAGTTGAGGAAGCACCTAAAGAAGTGCAATTCACGACCGAAGGATCTGCCTGAGTATATAACACCTGGGATCAATTTGACGGATTCAACTATGCCGACGGTACAGGAAGTAACCTATCCGATCTCATCCGTTCCAGAAGATGTACTTCTTCATTTAATCGAGAGAATCAATTTGGTATACGCAGAGGAGAAGTTGAACTGTAAAAAAAGCATTCTAACTCACCCATGCATGGAGTTAGCACTGTCGAATTCTGAGATGGGCATGAATACCAAGAAGCATCTCATTCAAAATTCGTCGCTCATCAAAAACATGGAGGGGAATGGTTTTTTGAAAGAGAATATGACATTTGTCGAGTTCGGCGCCGGCCGGGGTCATTTAGGATTTTGGATAAGTCAGGCCGTCAACGAGAAAACAAACTGTTCGTTGGTACTCATCGACAAGGCAAGCCACAGGCATAAGTCAGACAATAAACTTAAGGGAGTGTCTCCGGTCAGCACGGAGAGAATCAGAGCTGATATTGCCGATGTAGAATTGGCCAAAGTGTCCCTTTTGCGAGAATCCAAAAACGCTGTCGTCGGAGTGACAAAACATCTTTGTGGAATTGCAACTGATCTGGCCCTGAGGTGCATTGCACGTGGAAAATCTGGTGGTTTGAATGTGGCAGGAGTTGTCATGGCATTTTGCTGCCATCACAGGTGCACGTGGACAAGTTACGCTGGAAAGGAGTTTCTCCTGCAGAAAGGGTTTACTCCAGAAGAGTTTTCAGCTTTATGTAGCATCAGTAGTTGGGCTACTTGCGGATCGGGAAGACCTCGTTGGAAGTCGGCAGAAACGACGCCCGAGATAGTCGGCGAAGAGACCGATCGTTATAAGCGGCACGGTCTAACACAGGAGGTGCGCGAGGAAATAGGCCGGAAGTGTAAGCTAATTCTCAATCACGGGAGGTTGAGATATCTGGAACAACACGGATTTGAAGGAACATTTCCCAATAAAGTGGGAGACAACCGCGTCGGAAAAATCACGTCGTCCCTGGAGAAATTTAAGGAGGCCCCGAAACGCTTTAtccgtaaaaaaaacttttcctcgGAAGGACCTGTGGAGTCGAAAGCAAAACGGACACGGTCCTCGCGAGCCCTCGTAGTCAAATCGGACAAAAAAACCCGTGACGAcccaaataaattgaaatcgCGGCTGAGAGACAAGCAAAAGAGTGAGGTGAAATATTGGTGCGACTCCTGTGATGCCTGTTTTACGGACAAGAAACTCTGCAGACAACATGTAATGAAACACGTCGAAGAGAATCAAATGAATGGAAACTCACTGGATGAAAAGACACGAAAAGAACCCAAGCACGTGTGTCTGGTGTGCAACATAAAATTCCTCTCTCAAGACCTCTACAACCAACACCAGAACATCCACACGGGAGAAAGGCCATTCAAATGTGACATGTGCGATAAGTCTTACCCTCTGAAACTGTCCCTGGGCAAACACAAAGTCATTAAGCACAACCCTAATTATAAGCCGAAGAAACCGTCTAAGAGATTACAGTGTGAGGAATGTGGGAAACAGTTTGCCTACTCGCATTCGTTGAAAAGTCATCTGATGACACACACCGGACTGAAACCATATGTCTGCAGCCACTGTGGGAAGTCGCTGACTACGCGACAGACTCTCTATGAGCATGTAAACGCCATCCATACCGGAAACAAGCCTTACGCTTGTGATGAATGTGACAAGTCCTTCGTGACATCGAAAATTCTTCGTCTGCACAAGAAAATTCACCTAAAGGACAAGCCTCATGTATGCAAGATGTGTGGTAAAGGCTTCACCCAGAGCACACCTCTCCTTTTCCACATGAGATATCACTTGGGTCAGAAGCCTTTCACATGTTCCCATTGCAACAAGGGCTTTGTGTCCGTCTCTCTAATGAAGCGTCACATCAGACTTAGTCACGAGGAATGCAACAAGGAGATTCTTCACTGTTCCCAGTGCCCCGAAATCTTCTACTCCAAACTTTTACTTCGGAAGCACAAAAAGGTTCACTGGCCGACTGTGTACACCTGTGATTCTTGCCAGAAGACTTTCGACCTTCGGAGCAAATACAACCGACACATGAGGAGTCACAACAAGTTGGATTTGAGTTGTGGTCAATGCGGAAAAGTTCTGTCATCGAAGTCATCGCTCAAAAGGCACTTCAAAACGCACCTGAATGAAAATCACAAGACTTTGGGGCACATAATGGTGTTTCAACAGATATCGGGAGCTAATTTACAGACAGTTAAAAATTCTCTCTATAAATGCATCATTTGCGGAAAGAGTTACGAgacggaaattaaattgtacctTCACATAACGAGTCACTCCAGAGAGGTCATGGCCTCGAAAAGTGATGAAGAATCGTCGAAGCACAAGAAATACAAATGTGACGTTTGCGAATTTTCCTGTCGAACCGTGAAAGCCATCAGTCAACACAGAAGGACACATTCCAATACGAACAAGGAGAATCGCAGTCCAAACGGGTTTGCCAAGAAAAAGAGACTGAGCAGGCGAGTGCAAGAAAAGCCGGATACACATGAGTGTGAGATATGTGGGGAAACGTGCGAGACGCTAACCGAATTCTATTGCCACACGGCAACTCATGAAAATCGTCCATTCCAATGTAAGATCTGTGGGAAGCGATACAAAGGCAAACACGAACTGAATTTGCACGTGAAAACAAATCATAGGAAGAAGGGTGCCGGGTACCAATGTGATATGTGCGATGAAGTTTTTAAGACCCGCGGAAAGGTGCAAATTCACGTGGAAACTAGCCATccggaggaaaataaaattgacgaTGCGGCAACCAGTCCGAACTTCCTAGAAGCAATGGaacaagatgaaaaagaattgaaatgtgCCTTTTGCGAGTTGATTTTTCACGCTGAAAATGACCTAAGAGGTCACCTCAAACAGCATTCCTCAGAAGAAGAGTACTGCGAATGCGATGTCTGTAAAAAATGCTTCACTTCTAAGAAGAGAATTTTGCAACACCTCGTGAAAACGCATCTGAAAGGAAAACTATATGGGGACGATGAGGAGGAGGACGAGGAAGAGGCTATTATTTTGGAGGATAATGAATGTgacaacaatgaaaaagatgaggaaaaaacgaaaaagaagcGACTGGGAAAGCCAGAGAAGCCATTCAAATGTGATGAAGAAAACTGCCAATACTCAACGACACAACATTCCCTTCTAAAGAGTCACAAGTTCAAGCACAATCCTTTTTATGAATGTGTTACATGTCAGGAGAAGTTTCCATCACGTCAGGATTTGAAAGGCCACATGAAGATACACGGAGACAGACCATACAAATGTGATCAGTGCAATAAGTGCTACAAAGACAAGCACGGGCTCGGCTGGCACAAGAAGGTTCAGCACGACCCATCGAGGCTCAAATTCACTTGCGAGTTATGCGGCAAGACCTACCCGTTTGACAGCCTTCTCACGCAGCACATCAATCTCACACACGCTACCGAGAAGCAGAGTGTCTGCGATATATGCGGGAAGAACGTGAGCAAGACGTACCTGCCGATGCACAGGCGGACCCACGGGGAGAAGCACTACGCTTGCGACGTTTGTCACAAGACGTTCCTAGAAAAGGCCTACCTGAAACGTCACAAAATGATACACACGGGAGAAAAACCTTATGTGTGTAGCGTGTGTGGGAACTTATTCAGGCAGCACAGTACATTGACGATTCACATGAGAACGCACACGGGAGACCGACCCTACAAATGTGTGACATGTGAGAACGCGTATAAGACACATCACAATTTAAAGAAGCACTACAGGAGAAGTGGCCATAACGTatttttagcAGTGTACTCAAGTTCACAAGAAGATTCACTTGAACAAGCGCGTTGCGAGAGTGGTGTCAGACAGCAAACGGAACCAAAGGCCACACGGAGAAGAATTaagggaatgaaaaaagttacaGCGAAACGGAAGAAGGAGATCGAGAATCTTATAGTCGACATCTTCCagcaaaaattacagaaaaaacaaGGGAACAGTTGTATTGATAATACCTTGACCGATGAGACTAGAACAAGTACAAAAGAGAGCACCTCTGGATTAGCAAGTAAAGTACAAGAAGAAGATATGTTGACCTGTGGCAATATTGATGACATGAAATCGGATGGAGGGGGTCGTGGGTTTTCAGGTGACGTTACACCTGGAAGCGAAAAGGGTGGCAAGAAACGAACAAAAGCAAAGAAGATTATCACCTGCGAGTTTTGCGGAAAGAATTTCGAGAGGAATGGCAATTATTTGGAACACAGAAGAACACATACCGGCGAAAAGCCTTATGAATGCGGTGTTTGTCTCATGCGATTTGGGTCTCACGCGGGACTCAGCAGGCACAAATTCGTTCACCAGGACTCCCGAACCTTCGCTTGCGACATATGCAACAAGATCTTCAAGCATCAGATCCAATTGAAATACCATAAGGAGACGCATACAAACACAACGCCCCTAAATTGCGACATGTGCTCTTACGTGACTCTATCAAAACACTACCTAAACCTACACAGAGCCACCCACGTGAACCGCGACCGTTTCGTCTGTGGCGCATGCAACAAAGGCTTTAATTCACGAACTTACCTTCTCGAACACATGAACAAGCATTCGGGTGATAAGCCTTTCCTGTGTGACAAGTGTGGGAAATCATACCCTGCCAGGTACAGCCTGGCCATTCATAAGCAGATGAAGCACGATCCAAACTACAAGCCGCGGGGTCGTGTTCCCTGTCAGTTTTGtggaaaaatgattttaaatagaaagCAAGATCTGGTAAGACATCGGGGCATACACACTGGAGAAAAGCCTTACGTCTGTCACTTCTGCGGAAAGGCAGTCACCAACAGGGAGTCGTTGAAAACCCACGTTCGACTTCACACGGGTGAGAAGCCGTTTTCCTGCGACACTTGTGGATCTAATTTTGTAAGCAAAAACCTTCTGAGGGTGCATAAGAGAACACACACGGGAGAGAAACCCTACTGCTGCACCCTTTGTGACAAATCCTTCACGCAGAGATCGAGTCTAGTCGTTCATCAGAGAACTCACGCGACAAGCTGCCTTCTTGAATGTGAGCATTGCAAAAAAACATTCAGCAATTTCAACGCCTTACAGGAGCACATGAAAACTCACGCGAGTGGTATTTTAGTCTACAGAGTACTCACATAG
- Protein Sequence
- MAPKAGKKFCVEHGGVERHVSVEDAEEEGDRMPCPYDSKHSCYVKKLRKHLKKCNSRPKDLPEYITPGINLTDSTMPTVQEVTYPISSVPEDVLLHLIERINLVYAEEKLNCKKSILTHPCMELALSNSEMGMNTKKHLIQNSSLIKNMEGNGFLKENMTFVEFGAGRGHLGFWISQAVNEKTNCSLVLIDKASHRHKSDNKLKGVSPVSTERIRADIADVELAKVSLLRESKNAVVGVTKHLCGIATDLALRCIARGKSGGLNVAGVVMAFCCHHRCTWTSYAGKEFLLQKGFTPEEFSALCSISSWATCGSGRPRWKSAETTPEIVGEETDRYKRHGLTQEVREEIGRKCKLILNHGRLRYLEQHGFEGTFPNKVGDNRVGKITSSLEKFKEAPKRFIRKKNFSSEGPVESKAKRTRSSRALVVKSDKKTRDDPNKLKSRLRDKQKSEVKYWCDSCDACFTDKKLCRQHVMKHVEENQMNGNSLDEKTRKEPKHVCLVCNIKFLSQDLYNQHQNIHTGERPFKCDMCDKSYPLKLSLGKHKVIKHNPNYKPKKPSKRLQCEECGKQFAYSHSLKSHLMTHTGLKPYVCSHCGKSLTTRQTLYEHVNAIHTGNKPYACDECDKSFVTSKILRLHKKIHLKDKPHVCKMCGKGFTQSTPLLFHMRYHLGQKPFTCSHCNKGFVSVSLMKRHIRLSHEECNKEILHCSQCPEIFYSKLLLRKHKKVHWPTVYTCDSCQKTFDLRSKYNRHMRSHNKLDLSCGQCGKVLSSKSSLKRHFKTHLNENHKTLGHIMVFQQISGANLQTVKNSLYKCIICGKSYETEIKLYLHITSHSREVMASKSDEESSKHKKYKCDVCEFSCRTVKAISQHRRTHSNTNKENRSPNGFAKKKRLSRRVQEKPDTHECEICGETCETLTEFYCHTATHENRPFQCKICGKRYKGKHELNLHVKTNHRKKGAGYQCDMCDEVFKTRGKVQIHVETSHPEENKIDDAATSPNFLEAMEQDEKELKCAFCELIFHAENDLRGHLKQHSSEEEYCECDVCKKCFTSKKRILQHLVKTHLKGKLYGDDEEEDEEEAIILEDNECDNNEKDEEKTKKKRLGKPEKPFKCDEENCQYSTTQHSLLKSHKFKHNPFYECVTCQEKFPSRQDLKGHMKIHGDRPYKCDQCNKCYKDKHGLGWHKKVQHDPSRLKFTCELCGKTYPFDSLLTQHINLTHATEKQSVCDICGKNVSKTYLPMHRRTHGEKHYACDVCHKTFLEKAYLKRHKMIHTGEKPYVCSVCGNLFRQHSTLTIHMRTHTGDRPYKCVTCENAYKTHHNLKKHYRRSGHNVFLAVYSSSQEDSLEQARCESGVRQQTEPKATRRRIKGMKKVTAKRKKEIENLIVDIFQQKLQKKQGNSCIDNTLTDETRTSTKESTSGLASKVQEEDMLTCGNIDDMKSDGGGRGFSGDVTPGSEKGGKKRTKAKKIITCEFCGKNFERNGNYLEHRRTHTGEKPYECGVCLMRFGSHAGLSRHKFVHQDSRTFACDICNKIFKHQIQLKYHKETHTNTTPLNCDMCSYVTLSKHYLNLHRATHVNRDRFVCGACNKGFNSRTYLLEHMNKHSGDKPFLCDKCGKSYPARYSLAIHKQMKHDPNYKPRGRVPCQFCGKMILNRKQDLVRHRGIHTGEKPYVCHFCGKAVTNRESLKTHVRLHTGEKPFSCDTCGSNFVSKNLLRVHKRTHTGEKPYCCTLCDKSFTQRSSLVVHQRTHATSCLLECEHCKKTFSNFNALQEHMKTHASGILVYRVLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -